Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060796.seq
         (641 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPYUK71.03c |||C2 domain protein|Schizosaccharomyces pombe|chr...    26   4.0  
SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase Snf21|...    26   4.0  
SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr...    26   5.3  
SPAC23H4.01c ||SPAP27G11.01|sterol binding ankyrin repeat protei...    26   5.3  
SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces ...    26   5.3  
SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2 |Schizosacch...    26   5.3  
SPAC1002.05c |jmj2||histone demethylase Jmj2 |Schizosaccharomyce...    26   5.3  
SPAC3A12.12 |atp11||F1-ATPase chaperone Atp11 |Schizosaccharomyc...    26   5.3  
SPAC1952.01 ||SPAC1B3.19|Pig-U|Schizosaccharomyces pombe|chr 1||...    25   7.0  

>SPAPYUK71.03c |||C2 domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1225

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = -3

Query: 114 WLFGSKKFDLSSMMIFYVLCVQYF 43
           +LFG  +F   S+ I   +C+QY+
Sbjct: 167 FLFGYLRFGFLSLFIIMAVCIQYY 190


>SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase
           Snf21|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1199

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +1

Query: 457 LKASKAYENDNTHILKLCKILK 522
           LK S A E+DNT   +LC +L+
Sbjct: 22  LKESGATEHDNTEYAQLCDVLR 43


>SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1516

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = -3

Query: 138 ELSNSTNLWLFGSKKFDLSSMMIFYVLCVQYFINF*RKTLA 16
           E  NS     FG+K+F +    +  V C + FI+  R T++
Sbjct: 555 EFKNSYQKSRFGNKEFTIKHYALDVVYCAEGFIDKNRDTIS 595


>SPAC23H4.01c ||SPAP27G11.01|sterol binding ankyrin repeat
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 945

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 15/61 (24%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
 Frame = +2

Query: 113 QRFVELDSSQAFDNLTTNEKLYAHYLSQAAWNG-GLIVLVQTSPESPKNSPCCIESLWLS 289
           +++VE        + TT +K    + S   ++G    VLV     + +  P C++  W S
Sbjct: 742 EKYVEPYDHMEIVDETTGDKAVIRFKSGGMFSGRSEDVLVTVIRSNGEEDPKCLQGKWTS 801

Query: 290 H 292
           H
Sbjct: 802 H 802


>SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1877

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = -2

Query: 265  ARRILW*LRTGLYQYYKSTVPCSLTQIM 182
            A +ILW ++  LY+   +TVP S+  I+
Sbjct: 1458 AHQILWNMKANLYKDEAATVPDSIKPIL 1485


>SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1318

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 11/26 (42%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
 Frame = +1

Query: 421 IPNLPAES-LELILKASKAYENDNTH 495
           + NLP E+ L+ +L   + +ENDN H
Sbjct: 305 LKNLPEEATLDCMLSICQVFENDNLH 330


>SPAC1002.05c |jmj2||histone demethylase Jmj2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 715

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 12/42 (28%), Positives = 20/42 (47%)
 Frame = +1

Query: 343 FQAFLVYAGGLFANSGNYKGFGDTKFIPNLPAESLELILKAS 468
           F  F  +    +  S NY+ +GDTK    +P +  E   +A+
Sbjct: 462 FSTFCWHVEDNYTYSVNYQHYGDTKLWYGIPGDQAERFERAA 503


>SPAC3A12.12 |atp11||F1-ATPase chaperone Atp11 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 286

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = -1

Query: 197 PDSNNEHIISHSLLDYQKPANYPTP 123
           P+ N  H++  SLL+Y+   +Y  P
Sbjct: 180 PNKNEAHLLVTSLLEYKLKGSYAAP 204


>SPAC1952.01 ||SPAC1B3.19|Pig-U|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 408

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = +2

Query: 332 LKMIFRLFSSMQEVYLPTAVTIKVLVIQSSFQIY 433
           L ++F L  S++  YLP  +TI ++ + S F+ Y
Sbjct: 274 LPLMFVLPVSIRLYYLPLPITIALIGLHSLFKAY 307


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,752,577
Number of Sequences: 5004
Number of extensions: 57476
Number of successful extensions: 156
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)