Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060796.seq
(641 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_1261 + 27410921-27413401 31 1.0
12_02_0507 + 19810446-19811048,19811220-19811466,19811590-198121... 30 1.4
06_03_0228 - 18439659-18440900,18441212-18441736,18441813-184421... 30 1.8
08_01_0973 + 9803917-9804519,9804691-9805596,9805908-9807149 29 3.1
10_02_0149 - 5873273-5874514,5874826-5875731,5875903-5876505 29 4.1
06_01_1011 + 7879283-7879885,7880057-7880962,7881274-7882515 29 4.1
05_03_0226 - 10645036-10646001,10646313-10646828,10646905-106472... 29 4.1
04_03_0101 - 11242252-11243295,11243607-11244131,11244208-112445... 29 4.1
05_01_0180 + 1268129-1268237,1268382-1268731,1268903-1269808,127... 28 5.5
11_06_0053 + 19667076-19667774,19668001-19669803,19669911-19669928 28 7.2
03_06_0239 - 32578231-32578353,32578431-32578655,32579081-325792... 28 7.2
>12_02_1261 + 27410921-27413401
Length = 826
Score = 30.7 bits (66), Expect = 1.0
Identities = 17/44 (38%), Positives = 22/44 (50%)
Frame = +2
Query: 131 DSSQAFDNLTTNEKLYAHYLSQAAWNGGLIVLVQTSPESPKNSP 262
DS+ E+ + YLS N G I LVQ + +SPK SP
Sbjct: 226 DSATTISKSNKRERKKSKYLSPPYTNLGGIALVQKASDSPKPSP 269
>12_02_0507 +
19810446-19811048,19811220-19811466,19811590-19812125,
19812397-19813620
Length = 869
Score = 30.3 bits (65), Expect = 1.4
Identities = 25/91 (27%), Positives = 43/91 (47%), Gaps = 3/91 (3%)
Frame = +1
Query: 280 VAEPLENLKQSALKSGVSEDDFQAFLVYAGGLFANSGNY--KGFGDTKFI-PNLPAESLE 450
+AE L N K+ A++ G +ED + F A LFA+ N +G GD + + ++
Sbjct: 426 IAESLTNCKRLAVECGAAEDSVEYFC--ATQLFASKHNRDGEGSGDEDISDEDSSDDEID 483
Query: 451 LILKASKAYENDNTHILKLCKILKMPFMGLH 543
LI+ K E D L ++ ++ L+
Sbjct: 484 LIIYILKKREMDRRRACMLAAMIGTYYLELY 514
>06_03_0228 -
18439659-18440900,18441212-18441736,18441813-18442118,
18442290-18442877
Length = 886
Score = 29.9 bits (64), Expect = 1.8
Identities = 24/91 (26%), Positives = 43/91 (47%), Gaps = 3/91 (3%)
Frame = +1
Query: 280 VAEPLENLKQSALKSGVSEDDFQAFLVYAGGLFANSGNY--KGFGDTKFIPNLPA-ESLE 450
+AE L N ++ A++ G +ED + F A LFA+ N +G GD + + ++
Sbjct: 437 IAESLTNCQRLAVECGAAEDSVEYFC--ATQLFASKHNRDGEGSGDEDISDEYSSDDEID 494
Query: 451 LILKASKAYENDNTHILKLCKILKMPFMGLH 543
LI+ K E D L ++ ++ L+
Sbjct: 495 LIIYILKKREMDRRRACMLATMIGTYYLELY 525
>08_01_0973 + 9803917-9804519,9804691-9805596,9805908-9807149
Length = 916
Score = 29.1 bits (62), Expect = 3.1
Identities = 24/91 (26%), Positives = 44/91 (48%), Gaps = 3/91 (3%)
Frame = +1
Query: 280 VAEPLENLKQSALKSGVSEDDFQAFLVYAGGLFANSGNY--KGFGDTKFI-PNLPAESLE 450
+AE L N ++ A++ G +ED + F A LFA++ N +G GD + + ++
Sbjct: 467 IAESLTNCQRLAVECGAAEDSVEYFC--ATQLFASNHNRDGEGSGDEDISDEDSSDDEID 524
Query: 451 LILKASKAYENDNTHILKLCKILKMPFMGLH 543
LI+ K E D L ++ ++ L+
Sbjct: 525 LIIYILKKREMDRRRACMLAAMIGTYYLELY 555
>10_02_0149 - 5873273-5874514,5874826-5875731,5875903-5876505
Length = 916
Score = 28.7 bits (61), Expect = 4.1
Identities = 24/91 (26%), Positives = 43/91 (47%), Gaps = 3/91 (3%)
Frame = +1
Query: 280 VAEPLENLKQSALKSGVSEDDFQAFLVYAGGLFANSGNY--KGFGDTKFI-PNLPAESLE 450
+AE L N ++ A++ G +ED + F A LFA+ N +G GD + + ++
Sbjct: 467 IAESLTNCQRLAVECGAAEDSVEYFC--ATQLFASKHNRDGEGSGDEDISDEDSSDDEID 524
Query: 451 LILKASKAYENDNTHILKLCKILKMPFMGLH 543
LI+ K E D L ++ ++ L+
Sbjct: 525 LIIYILKKREMDRRRACMLAAMIGTYYLELY 555
>06_01_1011 + 7879283-7879885,7880057-7880962,7881274-7882515
Length = 916
Score = 28.7 bits (61), Expect = 4.1
Identities = 24/91 (26%), Positives = 43/91 (47%), Gaps = 3/91 (3%)
Frame = +1
Query: 280 VAEPLENLKQSALKSGVSEDDFQAFLVYAGGLFANSGNY--KGFGDTKFI-PNLPAESLE 450
+AE L N ++ A++ G +ED + F A LFA+ N +G GD + + ++
Sbjct: 467 IAESLTNCQRLAVECGAAEDSVEYFC--ATQLFASKHNRDGEGSGDEDISDEDSSDDEID 524
Query: 451 LILKASKAYENDNTHILKLCKILKMPFMGLH 543
LI+ K E D L ++ ++ L+
Sbjct: 525 LIIYILKKREMDRRRACMLAAMIGTYYLELY 555
>05_03_0226 -
10645036-10646001,10646313-10646828,10646905-10647210,
10647382-10647984
Length = 796
Score = 28.7 bits (61), Expect = 4.1
Identities = 24/91 (26%), Positives = 43/91 (47%), Gaps = 3/91 (3%)
Frame = +1
Query: 280 VAEPLENLKQSALKSGVSEDDFQAFLVYAGGLFANSGNY--KGFGDTKFI-PNLPAESLE 450
+AE L N ++ A++ G +ED + F A LFA+ N +G GD + + ++
Sbjct: 439 IAESLTNCQRLAVECGAAEDSVEYFC--ATQLFASKHNRDGEGSGDEDISDEDSSDDEID 496
Query: 451 LILKASKAYENDNTHILKLCKILKMPFMGLH 543
LI+ K E D L ++ ++ L+
Sbjct: 497 LIIYILKKREMDRRRACMLAAMIGTYYLELY 527
>04_03_0101 -
11242252-11243295,11243607-11244131,11244208-11244513,
11244692-11245231
Length = 804
Score = 28.7 bits (61), Expect = 4.1
Identities = 24/91 (26%), Positives = 43/91 (47%), Gaps = 3/91 (3%)
Frame = +1
Query: 280 VAEPLENLKQSALKSGVSEDDFQAFLVYAGGLFANSGNY--KGFGDTKFI-PNLPAESLE 450
+AE L N ++ A++ G +ED + F A LFA+ N +G GD + + ++
Sbjct: 421 IAESLTNCQRLAVECGATEDSVEYFC--ATQLFASKHNRDGEGSGDEDISDEDSSDDEID 478
Query: 451 LILKASKAYENDNTHILKLCKILKMPFMGLH 543
LI+ K E D L ++ ++ L+
Sbjct: 479 LIIYILKKREMDRRRACMLAAMIGTYYLELY 509
>05_01_0180 +
1268129-1268237,1268382-1268731,1268903-1269808,
1270120-1271361
Length = 868
Score = 28.3 bits (60), Expect = 5.5
Identities = 23/91 (25%), Positives = 42/91 (46%), Gaps = 3/91 (3%)
Frame = +1
Query: 280 VAEPLENLKQSALKSGVSEDDFQAFLVYAGGLFANSGNYKGFG---DTKFIPNLPAESLE 450
+AE L N ++ A++ G +ED + F A LFA+ N G G + + + ++
Sbjct: 419 IAESLTNCQRLAVECGAAEDSVEYFC--ATQLFASKHNRDGEGSGDEDTSDEDSSDDEID 476
Query: 451 LILKASKAYENDNTHILKLCKILKMPFMGLH 543
LI+ K E D L ++ ++ L+
Sbjct: 477 LIIYILKKREMDRRRACMLAAMIGTYYLELY 507
>11_06_0053 + 19667076-19667774,19668001-19669803,19669911-19669928
Length = 839
Score = 27.9 bits (59), Expect = 7.2
Identities = 12/41 (29%), Positives = 21/41 (51%)
Frame = +1
Query: 421 IPNLPAESLELILKASKAYENDNTHILKLCKILKMPFMGLH 543
+PNL + + +L S + DN H +C L + ++ LH
Sbjct: 488 LPNLSSFPVLRVLDLSGCDQVDNRHCRDICNTLHLRYLNLH 528
>03_06_0239 -
32578231-32578353,32578431-32578655,32579081-32579248,
32579331-32579446,32579540-32579692,32579779-32579922,
32580775-32581576
Length = 576
Score = 27.9 bits (59), Expect = 7.2
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = -2
Query: 385 CWQIDLLHRREKPENHLQIHQ 323
C + ++HR KPEN L IHQ
Sbjct: 228 CHSLGVMHRDLKPENFLFIHQ 248
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,588,554
Number of Sequences: 37544
Number of extensions: 326169
Number of successful extensions: 750
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 740
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 750
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1584867848
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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