Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060796.seq
(641 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_37620| Best HMM Match : IncA (HMM E-Value=0.39) 30 1.4
SB_28937| Best HMM Match : 7tm_1 (HMM E-Value=2.1e-08) 29 4.2
SB_9909| Best HMM Match : AAA (HMM E-Value=0) 28 5.6
SB_23962| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.6
SB_42660| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.4
SB_59285| Best HMM Match : SecIII_SopE_N (HMM E-Value=3.7) 27 9.8
SB_49301| Best HMM Match : Glyco_hydro_67N (HMM E-Value=3.1) 27 9.8
SB_43594| Best HMM Match : Glyco_hydro_67N (HMM E-Value=3.1) 27 9.8
SB_42933| Best HMM Match : Orexin_rec2 (HMM E-Value=4.9) 27 9.8
SB_36027| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.8
SB_32006| Best HMM Match : Glyco_hydro_67N (HMM E-Value=3.1) 27 9.8
SB_31068| Best HMM Match : DUF240 (HMM E-Value=2.1) 27 9.8
SB_22438| Best HMM Match : Glyco_hydro_67N (HMM E-Value=1.7) 27 9.8
SB_18936| Best HMM Match : Glyco_hydro_67N (HMM E-Value=7) 27 9.8
SB_16991| Best HMM Match : Glyco_hydro_67N (HMM E-Value=3.1) 27 9.8
SB_15817| Best HMM Match : APOBEC_C (HMM E-Value=0.41) 27 9.8
SB_59692| Best HMM Match : CaMBD (HMM E-Value=7.5) 27 9.8
SB_55508| Best HMM Match : Glyco_hydro_67N (HMM E-Value=5.4) 27 9.8
SB_45439| Best HMM Match : Glyco_hydro_67N (HMM E-Value=3.1) 27 9.8
SB_39817| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.8
SB_38333| Best HMM Match : Glyco_hydro_67N (HMM E-Value=6) 27 9.8
SB_20603| Best HMM Match : Glyco_hydro_67N (HMM E-Value=3.1) 27 9.8
SB_20296| Best HMM Match : Glyco_hydro_67N (HMM E-Value=2.5) 27 9.8
SB_12196| Best HMM Match : Glyco_hydro_67N (HMM E-Value=7.5) 27 9.8
SB_9286| Best HMM Match : DUF240 (HMM E-Value=1) 27 9.8
SB_8796| Best HMM Match : Glyco_hydro_67N (HMM E-Value=3.1) 27 9.8
SB_7026| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.8
>SB_37620| Best HMM Match : IncA (HMM E-Value=0.39)
Length = 307
Score = 30.3 bits (65), Expect = 1.4
Identities = 14/28 (50%), Positives = 17/28 (60%)
Frame = +1
Query: 1 RHEQNSQSFTLKINKILYTKNVKNHHGR 84
R Q QS K+N ILY KN ++H GR
Sbjct: 51 RKLQRQQSLLEKLNIILYEKNARSHLGR 78
>SB_28937| Best HMM Match : 7tm_1 (HMM E-Value=2.1e-08)
Length = 1258
Score = 28.7 bits (61), Expect = 4.2
Identities = 19/50 (38%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Frame = -1
Query: 284 ATKTLCSKENSLVTQDWSVPIL*VHRSMQPDSNNEHIISHSLLDY-QKPA 138
+T+ L ++ L TQ S + HRS QP+SNN + +H+L + KPA
Sbjct: 332 STQLLSTQLQLLSTQLLSTQLQ-QHRSQQPNSNNTALNNHTLNSHIPKPA 380
>SB_9909| Best HMM Match : AAA (HMM E-Value=0)
Length = 400
Score = 28.3 bits (60), Expect = 5.6
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = -2
Query: 610 RVQLLEKYVVTPLLAKPRLVNLGASP*MAFLVF 512
++ L + V TPLL R VNLG P L+F
Sbjct: 92 QIDKLREVVETPLLHPERFVNLGIEPPKGVLLF 124
>SB_23962| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 156
Score = 28.3 bits (60), Expect = 5.6
Identities = 15/50 (30%), Positives = 24/50 (48%)
Frame = +1
Query: 262 LLHRVFVAEPLENLKQSALKSGVSEDDFQAFLVYAGGLFANSGNYKGFGD 411
+L+ F P E S L+ G+ E + AF+ + + N G G+GD
Sbjct: 35 ILNEDFEVNP-EEFPGSFLRGGILEGSWFAFVSFTTVGYVNEGGLDGYGD 83
>SB_42660| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 477
Score = 27.9 bits (59), Expect = 7.4
Identities = 13/24 (54%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
Frame = -1
Query: 212 HRSMQ-PDSNNEHIISHSLLDYQK 144
H S + PDS HI SHS+LDY +
Sbjct: 5 HYSQESPDSPEFHIPSHSILDYSR 28
>SB_59285| Best HMM Match : SecIII_SopE_N (HMM E-Value=3.7)
Length = 204
Score = 27.5 bits (58), Expect = 9.8
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +2
Query: 158 TTNEKLYAHYLSQAAWNGGLIVLVQTSPESPKNSP 262
T + LYA + +A+W L LV + KNSP
Sbjct: 150 TAEKGLYAFHYDEASWIESLDALVPVQVKEIKNSP 184
>SB_49301| Best HMM Match : Glyco_hydro_67N (HMM E-Value=3.1)
Length = 189
Score = 27.5 bits (58), Expect = 9.8
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +2
Query: 158 TTNEKLYAHYLSQAAWNGGLIVLVQTSPESPKNSP 262
T + LYA + +A+W L LV + KNSP
Sbjct: 135 TAEKGLYAFHYDEASWIESLDALVPVQVKEIKNSP 169
>SB_43594| Best HMM Match : Glyco_hydro_67N (HMM E-Value=3.1)
Length = 342
Score = 27.5 bits (58), Expect = 9.8
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +2
Query: 158 TTNEKLYAHYLSQAAWNGGLIVLVQTSPESPKNSP 262
T + LYA + +A+W L LV + KNSP
Sbjct: 288 TAEKGLYAFHYDEASWIESLDALVPVQVKEIKNSP 322
>SB_42933| Best HMM Match : Orexin_rec2 (HMM E-Value=4.9)
Length = 188
Score = 27.5 bits (58), Expect = 9.8
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +2
Query: 158 TTNEKLYAHYLSQAAWNGGLIVLVQTSPESPKNSP 262
T + LYA + +A+W L LV + KNSP
Sbjct: 150 TAEKGLYAFHYDEASWIESLDALVPVQVKEIKNSP 184
>SB_36027| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 204
Score = 27.5 bits (58), Expect = 9.8
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +2
Query: 158 TTNEKLYAHYLSQAAWNGGLIVLVQTSPESPKNSP 262
T + LYA + +A+W L LV + KNSP
Sbjct: 150 TAEKGLYAFHYDEASWIESLDALVPVQVKEIKNSP 184
>SB_32006| Best HMM Match : Glyco_hydro_67N (HMM E-Value=3.1)
Length = 497
Score = 27.5 bits (58), Expect = 9.8
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +2
Query: 158 TTNEKLYAHYLSQAAWNGGLIVLVQTSPESPKNSP 262
T + LYA + +A+W L LV + KNSP
Sbjct: 443 TAEKGLYAFHYDEASWIESLDALVPVQVKEIKNSP 477
>SB_31068| Best HMM Match : DUF240 (HMM E-Value=2.1)
Length = 453
Score = 27.5 bits (58), Expect = 9.8
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +2
Query: 158 TTNEKLYAHYLSQAAWNGGLIVLVQTSPESPKNSP 262
T + LYA + +A+W L LV + KNSP
Sbjct: 399 TAEKGLYAFHYDEASWIESLDALVPVQVKEIKNSP 433
>SB_22438| Best HMM Match : Glyco_hydro_67N (HMM E-Value=1.7)
Length = 296
Score = 27.5 bits (58), Expect = 9.8
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +2
Query: 158 TTNEKLYAHYLSQAAWNGGLIVLVQTSPESPKNSP 262
T + LYA + +A+W L LV + KNSP
Sbjct: 242 TAEKGLYAFHYDEASWIESLDALVPVQVKEIKNSP 276
>SB_18936| Best HMM Match : Glyco_hydro_67N (HMM E-Value=7)
Length = 154
Score = 27.5 bits (58), Expect = 9.8
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +2
Query: 158 TTNEKLYAHYLSQAAWNGGLIVLVQTSPESPKNSP 262
T + LYA + +A+W L LV + KNSP
Sbjct: 100 TAEKGLYAFHYDEASWIESLDALVPVQVKEIKNSP 134
>SB_16991| Best HMM Match : Glyco_hydro_67N (HMM E-Value=3.1)
Length = 258
Score = 27.5 bits (58), Expect = 9.8
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +2
Query: 158 TTNEKLYAHYLSQAAWNGGLIVLVQTSPESPKNSP 262
T + LYA + +A+W L LV + KNSP
Sbjct: 204 TAEKGLYAFHYDEASWIESLDALVPVQVKEIKNSP 238
>SB_15817| Best HMM Match : APOBEC_C (HMM E-Value=0.41)
Length = 248
Score = 27.5 bits (58), Expect = 9.8
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +2
Query: 158 TTNEKLYAHYLSQAAWNGGLIVLVQTSPESPKNSP 262
T + LYA + +A+W L LV + KNSP
Sbjct: 194 TAEKGLYAFHYDEASWIESLDALVPVQVKEIKNSP 228
>SB_59692| Best HMM Match : CaMBD (HMM E-Value=7.5)
Length = 204
Score = 27.5 bits (58), Expect = 9.8
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +2
Query: 158 TTNEKLYAHYLSQAAWNGGLIVLVQTSPESPKNSP 262
T + LYA + +A+W L LV + KNSP
Sbjct: 150 TAEKGLYAFHYDEASWIESLDALVPVQVKEIKNSP 184
>SB_55508| Best HMM Match : Glyco_hydro_67N (HMM E-Value=5.4)
Length = 154
Score = 27.5 bits (58), Expect = 9.8
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +2
Query: 158 TTNEKLYAHYLSQAAWNGGLIVLVQTSPESPKNSP 262
T + LYA + +A+W L LV + KNSP
Sbjct: 100 TAEKGLYAFHYDEASWIESLDALVPVQVKEIKNSP 134
>SB_45439| Best HMM Match : Glyco_hydro_67N (HMM E-Value=3.1)
Length = 154
Score = 27.5 bits (58), Expect = 9.8
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +2
Query: 158 TTNEKLYAHYLSQAAWNGGLIVLVQTSPESPKNSP 262
T + LYA + +A+W L LV + KNSP
Sbjct: 100 TAEKGLYAFHYDEASWIESLDALVPVQVKEIKNSP 134
>SB_39817| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 503
Score = 27.5 bits (58), Expect = 9.8
Identities = 16/57 (28%), Positives = 32/57 (56%)
Frame = +2
Query: 38 LIKYCTQRT*KIIMEDKSNFLLPNNQRFVELDSSQAFDNLTTNEKLYAHYLSQAAWN 208
L+ Y +R + + ++F L Q F++ Q +D ++T + YA+YL++ AW+
Sbjct: 76 LMSYGNERFIQYMASRTTSFTL---QGFLDKSGVQGYD-MSTFVRRYANYLNEKAWS 128
>SB_38333| Best HMM Match : Glyco_hydro_67N (HMM E-Value=6)
Length = 154
Score = 27.5 bits (58), Expect = 9.8
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +2
Query: 158 TTNEKLYAHYLSQAAWNGGLIVLVQTSPESPKNSP 262
T + LYA + +A+W L LV + KNSP
Sbjct: 100 TAEKGLYAFHYDEASWIESLDALVPVQVKEIKNSP 134
>SB_20603| Best HMM Match : Glyco_hydro_67N (HMM E-Value=3.1)
Length = 204
Score = 27.5 bits (58), Expect = 9.8
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +2
Query: 158 TTNEKLYAHYLSQAAWNGGLIVLVQTSPESPKNSP 262
T + LYA + +A+W L LV + KNSP
Sbjct: 150 TAEKGLYAFHYDEASWIESLDALVPVQVKEIKNSP 184
>SB_20296| Best HMM Match : Glyco_hydro_67N (HMM E-Value=2.5)
Length = 154
Score = 27.5 bits (58), Expect = 9.8
Identities = 18/58 (31%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
Frame = +2
Query: 92 NFLLPNNQRFV-ELDSSQAFDNLTTNEKLYAHYLSQAAWNGGLIVLVQTSPESPKNSP 262
N LL Q + +S + T + LYA + +A+W L LV KNSP
Sbjct: 77 NILLARIQNLMPSRKASLLWFKATAEKGLYAFHYDEASWIESLDALVPVQVNKIKNSP 134
>SB_12196| Best HMM Match : Glyco_hydro_67N (HMM E-Value=7.5)
Length = 160
Score = 27.5 bits (58), Expect = 9.8
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +2
Query: 158 TTNEKLYAHYLSQAAWNGGLIVLVQTSPESPKNSP 262
T + LYA + +A+W L LV + KNSP
Sbjct: 106 TAEKGLYAFHYDEASWIESLDALVPVQVKEIKNSP 140
>SB_9286| Best HMM Match : DUF240 (HMM E-Value=1)
Length = 292
Score = 27.5 bits (58), Expect = 9.8
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = +2
Query: 158 TTNEKLYAHYLSQAAWNGGLIVLVQTSPESPKNSP 262
T + LYA + +A+W L LV KNSP
Sbjct: 239 TAEKGLYAFHYDEASWIESLDALVHVQVNEIKNSP 273
>SB_8796| Best HMM Match : Glyco_hydro_67N (HMM E-Value=3.1)
Length = 204
Score = 27.5 bits (58), Expect = 9.8
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +2
Query: 158 TTNEKLYAHYLSQAAWNGGLIVLVQTSPESPKNSP 262
T + LYA + +A+W L LV + KNSP
Sbjct: 150 TAEKGLYAFHYDEASWIESLDALVPVQVKEIKNSP 184
>SB_7026| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 132
Score = 27.5 bits (58), Expect = 9.8
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +2
Query: 158 TTNEKLYAHYLSQAAWNGGLIVLVQTSPESPKNSP 262
T + LYA + +A+W L LV + KNSP
Sbjct: 78 TAEKGLYAFHYDEASWIESLDALVPVQVKEIKNSP 112
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,558,426
Number of Sequences: 59808
Number of extensions: 381904
Number of successful extensions: 896
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 857
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 896
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1620947750
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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