Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060796.seq
         (641 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    24   1.1  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    24   1.1  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    23   3.3  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    23   3.3  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   4.4  
L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein pro...    21   7.7  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   7.7  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   7.7  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              21   7.7  

>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -1

Query: 524 IFSILHNFSMCVLSFSYALDAFKINSNDSAGKF 426
           +FS L+N  + ++S  YA+   KI  N +  KF
Sbjct: 675 LFSQLYNALLILISTVYAVKTRKIPENFNESKF 707


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -1

Query: 524 IFSILHNFSMCVLSFSYALDAFKINSNDSAGKF 426
           +FS L+N  + ++S  YA+   KI  N +  KF
Sbjct: 765 LFSQLYNALLILISTVYAVKTRKIPENFNESKF 797


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -2

Query: 403 NLYSYRCWQIDLLHRREKPENHLQIH 326
           N   Y C ++DLL +RE     +QI+
Sbjct: 224 NTGEYSCLKVDLLFKREFSYYLIQIY 249


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -2

Query: 403 NLYSYRCWQIDLLHRREKPENHLQIH 326
           N   Y C ++DLL +RE     +QI+
Sbjct: 224 NTGEYSCLKVDLLFKREFSYYLIQIY 249


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -1

Query: 185 NEHIISHSLLDYQKPANYPTPRI 117
           N++II+H +L+Y    +   PRI
Sbjct: 786 NQNIITHMILNYVGSEDSVIPRI 808


>L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein
           protein.
          Length = 69

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 6/9 (66%), Positives = 7/9 (77%)
 Frame = -2

Query: 409 HQNLYSYRC 383
           H N+Y YRC
Sbjct: 39  HSNVYQYRC 47


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = -3

Query: 168 SFVVRLSKACELSNSTNLWL 109
           SFV+      E SNS+  WL
Sbjct: 31  SFVMEPPSRVEFSNSSGAWL 50


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = -3

Query: 168 SFVVRLSKACELSNSTNLWL 109
           SFV+      E SNS+  WL
Sbjct: 31  SFVMEPPSRVEFSNSSGAWL 50


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -1

Query: 542 CKPINGIFSILHNF 501
           C PIN  FS+L+ F
Sbjct: 696 CVPINVQFSVLYGF 709


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 180,413
Number of Sequences: 438
Number of extensions: 4126
Number of successful extensions: 10
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19315974
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)