Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060796.seq
         (641 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g27000.1 68415.m03242 cytochrome P450 family protein                28   4.6  
At1g38131.1 68414.m04669 expressed protein contains Pfam PF03138...    28   6.1  

>At2g27000.1 68415.m03242 cytochrome P450 family protein 
          Length = 514

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = -1

Query: 557 TG*SGCKPINGIF-SILHNFSMCVLSFSYALDAFKINSNDSAGK 429
           +G  GC  +N  + S+     + V  F + +D  KIN N+ AGK
Sbjct: 447 SGRRGCPGVNLAYVSVETAIGVMVQCFDWKIDGHKINMNEVAGK 490


>At1g38131.1 68414.m04669 expressed protein contains Pfam PF03138:
           Plant protein family. The function of this family of
           plant proteins is unknown; previously annotated as
           'growth regulator -related'  based on similarity to axi
           1 protein (GB:X80301) (GI:559920) from [Nicotiana
           tabacum], which, due to scienitific fraud was retracted.
           Retraction in: Schell J. EMBO J 1999 May 17;18(10):2908.
           PMID:10400497.
          Length = 589

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 15/56 (26%), Positives = 25/56 (44%)
 Frame = +1

Query: 355 LVYAGGLFANSGNYKGFGDTKFIPNLPAESLELILKASKAYENDNTHILKLCKILK 522
           ++YA GL    G + G     ++P     S E+  K      +DN+  L+L  + K
Sbjct: 68  MIYASGLLMCVGPFSGLVGWVYVPGSVYRSPEIYRKLKDDIFSDNSTALELSSVWK 123


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,996,301
Number of Sequences: 28952
Number of extensions: 285504
Number of successful extensions: 686
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 674
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 686
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1324661040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)