Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060794.seq
         (631 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPJ696.01c |vps17||retromer complex subunit Vps17|Schizosaccha...    27   1.7  
SPAC4H3.12c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   3.9  
SPBC28E12.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    26   5.2  

>SPAPJ696.01c |vps17||retromer complex subunit
           Vps17|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 549

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 13/46 (28%), Positives = 24/46 (52%)
 Frame = +1

Query: 190 RGDRVAPLIENTR*HFKVLE*KLDFITIDATAPHRLYRDMLSMNIK 327
           R D     +E  R H K+L  K+DF+T++     + Y    S++++
Sbjct: 381 RTDDALQALEVARVHEKLLSDKVDFVTLNLVKESKTYTKKTSVSLQ 426


>SPAC4H3.12c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 101

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = +1

Query: 454 NTRTLL*NIHVHNLCNVYCNY-LXIPTSLF 540
           +T +LL + H  N CN Y NY + + +SLF
Sbjct: 70  STVSLLSSAHKMNCCNFYSNYNILLVSSLF 99


>SPBC28E12.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 356

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 9/25 (36%), Positives = 17/25 (68%)
 Frame = -1

Query: 466 ACVYFNVGNITCFNNKIKVIHVNKL 392
           AC +FN+G    F+ + +++HV +L
Sbjct: 266 ACKFFNIGPQVYFDPRERLLHVKEL 290


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,493,963
Number of Sequences: 5004
Number of extensions: 48262
Number of successful extensions: 98
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 279695522
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)