Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060794.seq
         (631 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0762 + 27043460-27044319,27052096-27052912,27052992-270536...    29   3.0  

>11_06_0762 +
           27043460-27044319,27052096-27052912,27052992-27053649,
           27053698-27053934,27054091-27054161,27054346-27054441
          Length = 912

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 12/58 (20%), Positives = 28/58 (48%)
 Frame = -3

Query: 386 DNKISTYLNFVN*DFNDK*HFIFIDNISLYNLWGAVASIVIKSSFHSRTLKCQRVFSI 213
           DN +   ++       +K +FI +D+I     W  +   +++++  SR +   R+F +
Sbjct: 269 DNNVDQLIHASRDSLQNKRYFIVVDDIWSMEAWEVIRLALLENNNGSRVITTTRIFEV 326


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,762,729
Number of Sequences: 37544
Number of extensions: 259316
Number of successful extensions: 556
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 537
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 556
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1537558360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)