Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060794.seq
         (631 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF045639-8|AAC02566.1|  649|Caenorhabditis elegans Hypothetical ...    31   0.90 
AF000261-8|AAB52929.1|  376|Caenorhabditis elegans T box family ...    29   2.7  
AF039044-11|AAG24131.1|  333|Caenorhabditis elegans Serpentine r...    28   6.3  
AC024776-3|AAK68466.1|  453|Caenorhabditis elegans Hypothetical ...    28   6.3  
AF022972-13|AAC48241.2|  527|Caenorhabditis elegans Udp-glucuron...    27   8.4  

>AF045639-8|AAC02566.1|  649|Caenorhabditis elegans Hypothetical
           protein B0212.1 protein.
          Length = 649

 Score = 30.7 bits (66), Expect = 0.90
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +1

Query: 493 LCNVYCNYLXIPTSLFVCTVIFILN*IQYVYCN 591
           LC +  N   + TSL VC ++FI   + +++CN
Sbjct: 223 LCELDPNCSALSTSLDVCAILFIFIQMHFIFCN 255


>AF000261-8|AAB52929.1|  376|Caenorhabditis elegans T box family
           protein 18 protein.
          Length = 376

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = -1

Query: 520 INNYNKRYTDYARVYFKVACVYF 452
           INN N++Y   A  Y KV C YF
Sbjct: 7   INNNNQKYPQSAEEYHKVLCNYF 29


>AF039044-11|AAG24131.1|  333|Caenorhabditis elegans Serpentine
           receptor, class j protein37 protein.
          Length = 333

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -1

Query: 508 NKRYTDYARVYFKVACVYFNVGNITCF 428
           N ++  Y  + F + CVYF V + +CF
Sbjct: 125 NDKFHTYMTISFGIFCVYFVVWHASCF 151


>AC024776-3|AAK68466.1|  453|Caenorhabditis elegans Hypothetical
           protein Y41D4B.16 protein.
          Length = 453

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 14/46 (30%), Positives = 23/46 (50%)
 Frame = -1

Query: 250 IQEP*NVNVYFLLKEPHGRLVPSSNINRSKYTLNVFKKNLITVFIS 113
           I +P   N+YF    P       +N+N +++  N+F   L+ VF S
Sbjct: 173 IVQPRGTNIYFYQAMPSDYYTDVTNVNTTRW--NIFANPLMNVFAS 216


>AF022972-13|AAC48241.2|  527|Caenorhabditis elegans
           Udp-glucuronosyltransferase protein41 protein.
          Length = 527

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = -1

Query: 217 LLKEPHGRLVPSSNINRSKYTLNVFKKNLITVFISF 110
           L K PH  L+   ++ +S Y  + +K+N++ V  SF
Sbjct: 293 LKKRPHNVLISFGSMFKSIYMPDFYKENMVKVMKSF 328


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,796,790
Number of Sequences: 27780
Number of extensions: 272701
Number of successful extensions: 603
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 592
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 603
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1385109898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)