Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060794.seq
         (631 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    22   4.3  
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    22   5.7  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    21   7.5  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    21   7.5  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    21   7.5  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    21   7.5  
DQ435329-1|ABD92644.1|  150|Apis mellifera OBP12 protein.              21   7.5  
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    21   9.9  
DQ435332-1|ABD92647.1|  135|Apis mellifera OBP15 protein.              21   9.9  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    21   9.9  

>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = -2

Query: 279 CIDCDKIKFSFKNLKMSTC 223
           C+DCD+I+ S     +  C
Sbjct: 328 CLDCDEIRESLDTQFLQVC 346


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 10/35 (28%), Positives = 19/35 (54%)
 Frame = +2

Query: 299 IGICCL*I*SVTCR*NLSSQS*DRLKFYYPWQFIN 403
           +GI C  I SVT R N   +  + +   + W++++
Sbjct: 11  LGIACQGITSVTVRENSPRKLANSMNVIHEWKYLD 45


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = -2

Query: 93  YFIFLTFFLL 64
           YF+FLTFF +
Sbjct: 474 YFMFLTFFFI 483


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = -2

Query: 93  YFIFLTFFLL 64
           YF+FLTFF +
Sbjct: 460 YFMFLTFFFI 469


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = -2

Query: 93  YFIFLTFFLL 64
           YF+FLTFF +
Sbjct: 494 YFMFLTFFFI 503


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = -2

Query: 93  YFIFLTFFLL 64
           YF+FLTFF +
Sbjct: 443 YFMFLTFFFI 452


>DQ435329-1|ABD92644.1|  150|Apis mellifera OBP12 protein.
          Length = 150

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 5/24 (20%), Positives = 15/24 (62%)
 Frame = -3

Query: 113 ILSKISDISYFSHFFYCLWRRTGI 42
           ++++  +   +  F  C+W++TG+
Sbjct: 58  LINEEENFRNYGCFLACIWQQTGV 81


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 7/17 (41%), Positives = 13/17 (76%)
 Frame = -3

Query: 119 YFILSKISDISYFSHFF 69
           YF+ +K+S+I+  +H F
Sbjct: 77  YFLNAKVSEIAALNHKF 93


>DQ435332-1|ABD92647.1|  135|Apis mellifera OBP15 protein.
          Length = 135

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 6/14 (42%), Positives = 12/14 (85%)
 Frame = -3

Query: 167 IEIYIKCF*KKFNY 126
           +++YI+C  KKF++
Sbjct: 59  VQLYIECAMKKFSF 72


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 7/13 (53%), Positives = 8/13 (61%)
 Frame = -1

Query: 469 VACVYFNVGNITC 431
           V C+ FN G I C
Sbjct: 137 VECIVFNSGTILC 149


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 171,804
Number of Sequences: 438
Number of extensions: 4007
Number of successful extensions: 12
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18826962
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)