Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060794.seq
         (631 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g15990.1 68414.m01918 cyclic nucleotide-regulated ion channel...    36   0.029
At1g19780.1 68414.m02473 cyclic nucleotide-regulated ion channel...    33   0.21 
At4g30360.1 68417.m04314 cyclic nucleotide-regulated ion channel...    29   3.4  
At2g42840.2 68415.m05305 protodermal factor 1 (PDF1) identical t...    27   7.8  
At2g42840.1 68415.m05304 protodermal factor 1 (PDF1) identical t...    27   7.8  

>At1g15990.1 68414.m01918 cyclic nucleotide-regulated ion channel,
           putative (CNGC7) similar to cyclic nucleotide and
           calmodulin-regulated ion channel protein GI:4581207 from
           [Arabidopsis thaliana]
          Length = 709

 Score = 35.5 bits (78), Expect = 0.029
 Identities = 24/64 (37%), Positives = 30/64 (46%), Gaps = 3/64 (4%)
 Frame = -3

Query: 239 LKCQRVFSIKGATRSPRTKQQY*QIEIYIKCF*KKFNYGLY--FILSKI-SDISYFSHFF 69
           L C   F   G T   +T  +  +     K    KFNYG+Y   I S I S  ++FS F 
Sbjct: 284 LYCGTKFVSSGETEWIKTVPELLKSNCSAKADDSKFNYGIYGQAISSGIVSSTTFFSKFC 343

Query: 68  YCLW 57
           YCLW
Sbjct: 344 YCLW 347


>At1g19780.1 68414.m02473 cyclic nucleotide-regulated ion channel,
           putative (CNGC8) similar to cyclic nucleotide and
           calmodulin-regulated ion channel GI:4581207 from
           (Arabidopsis thaliana)
          Length = 728

 Score = 32.7 bits (71), Expect = 0.21
 Identities = 16/30 (53%), Positives = 20/30 (66%), Gaps = 3/30 (10%)
 Frame = -3

Query: 137 KFNYGLYF--ILSKI-SDISYFSHFFYCLW 57
           KFNYG+Y   + S I S  ++FS F YCLW
Sbjct: 328 KFNYGIYSQAVSSGIVSSTTFFSKFCYCLW 357


>At4g30360.1 68417.m04314 cyclic nucleotide-regulated ion channel,
           putative (CNGC17) similar to cyclic nucleotide and
           calmodulin-regulated ion channel cngc5 GI:4581205 from
           [Arabidopsis thaliana]
          Length = 720

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 10/29 (34%), Positives = 16/29 (55%), Gaps = 2/29 (6%)
 Frame = -3

Query: 137 KFNYGLY--FILSKISDISYFSHFFYCLW 57
           +F YG++   I   +    +F  +FYCLW
Sbjct: 327 EFKYGIFGNAITKNVVSSQFFERYFYCLW 355


>At2g42840.2 68415.m05305 protodermal factor 1 (PDF1) identical to
           protodermal factor 1 [Arabidopsis thaliana]
           gi|4929130|gb|AAD33869
          Length = 306

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = +3

Query: 18  NHSPSGGPYARPPPK 62
           +H PSGG Y+ PPP+
Sbjct: 129 SHPPSGGYYSSPPPR 143


>At2g42840.1 68415.m05304 protodermal factor 1 (PDF1) identical to
           protodermal factor 1 [Arabidopsis thaliana]
           gi|4929130|gb|AAD33869
          Length = 306

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = +3

Query: 18  NHSPSGGPYARPPPK 62
           +H PSGG Y+ PPP+
Sbjct: 129 SHPPSGGYYSSPPPR 143


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,418,706
Number of Sequences: 28952
Number of extensions: 230552
Number of successful extensions: 470
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 461
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 469
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1285411824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)