Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060793.seq
         (650 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    26   0.23 
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      23   2.2  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      23   2.2  
EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2 p...    23   2.9  
DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.    22   5.0  
AM292352-1|CAL23164.1|  250|Tribolium castaneum gustatory recept...    22   5.0  
AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    22   5.0  
AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless prot...    21   8.8  
AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    21   8.8  

>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 26.2 bits (55), Expect = 0.23
 Identities = 15/51 (29%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
 Frame = +2

Query: 326 LLNPQSDLTN--NDDNEISDTNNNLILDEYLKANIMPMYPLPMKYLTNHNL 472
           ++NPQ  +T+  N +   S TN+N      L   I    PLP K +   ++
Sbjct: 416 IINPQPQITSPSNTNTSTSSTNSNKPNSSDLNMLIKETMPLPRKLVRGQDV 466


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -3

Query: 177 NFQGPQRVSGHRRKC 133
           NF GP R++   R+C
Sbjct: 601 NFHGPHRLAARSRRC 615


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -3

Query: 177 NFQGPQRVSGHRRKC 133
           NF GP R++   R+C
Sbjct: 493 NFHGPHRLAARSRRC 507


>EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2
           protein.
          Length = 535

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -1

Query: 95  RIPWNSNAQAEKKTLPGPLG 36
           +IPW+ NA+A  K   G  G
Sbjct: 330 QIPWDKNAEALAKWANGQTG 349


>DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.
          Length = 314

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 11/40 (27%), Positives = 19/40 (47%), Gaps = 5/40 (12%)
 Frame = -2

Query: 190 HPSPEFSRSAESIRTPPQMRCSSRSE-----PYLPSIGFH 86
           HP    S+ + +   PPQ+  + R E     P +P + F+
Sbjct: 217 HPDSPNSKKSATPSPPPQLEVNERKENLTCQPAVPYVPFY 256



 Score = 21.4 bits (43), Expect = 6.7
 Identities = 8/19 (42%), Positives = 12/19 (63%), Gaps = 1/19 (5%)
 Frame = +2

Query: 290 PRGRR-AHEPHRVLLNPQS 343
           P G   A  PHR+ ++P+S
Sbjct: 89  PAGHEEAQSPHRIYMHPES 107


>AM292352-1|CAL23164.1|  250|Tribolium castaneum gustatory receptor
           candidate 31 protein.
          Length = 250

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = -2

Query: 499 NLCKLNIVSQVMVR*IFHWQWI 434
           +LCK  +V  + +R  F W +I
Sbjct: 84  SLCKAILVHAITIRSTFSWTFI 105


>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 7/25 (28%), Positives = 12/25 (48%)
 Frame = -2

Query: 223 YGYEPARHLHVHPSPEFSRSAESIR 149
           + Y P  H   +P+P +   A+  R
Sbjct: 76  WNYSPDNHFEQYPNPTYYNLADPAR 100



 Score = 21.0 bits (42), Expect = 8.8
 Identities = 14/46 (30%), Positives = 17/46 (36%)
 Frame = +3

Query: 159 SADLENSGEGCTWRCRAGSYPYPQLGRPQQTESDAESPVHDATNRA 296
           SA    S  G T    A        G P    S+A +P+H    RA
Sbjct: 17  SAATPISSSGMTSPAAAPPPATTSSGSPASVASNASAPLHIPAKRA 62


>AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless
           protein.
          Length = 302

 Score = 21.0 bits (42), Expect = 8.8
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = +2

Query: 311 EPHRVLLNPQS 343
           EPHR+ + PQS
Sbjct: 16  EPHRMQIKPQS 26


>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 21.0 bits (42), Expect = 8.8
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = +2

Query: 311 EPHRVLLNPQS 343
           EPHR+ + PQS
Sbjct: 16  EPHRMQIKPQS 26


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 148,250
Number of Sequences: 336
Number of extensions: 3276
Number of successful extensions: 13
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16760905
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)