Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060793.seq
         (650 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17G6.17 |pof8||F-box protein Pof8|Schizosaccharomyces pombe|...    29   0.77 
SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein lig...    28   1.0  
SPAC1782.09c |clp1|flp1|Cdc14-related protein phosphatase Clp1/F...    27   2.3  
SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyc...    27   3.1  
SPCC1450.14c |ero12||ER oxidoreductin Ero1b|Schizosaccharomyces ...    26   4.1  
SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated prote...    26   5.4  
SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharo...    26   5.4  
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch...    25   7.2  

>SPAC17G6.17 |pof8||F-box protein Pof8|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 402

 Score = 28.7 bits (61), Expect = 0.77
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +2

Query: 314 PHRVLLNPQSDLTNNDDNEISDTNNNLILDEYLKAN 421
           P ++ +      T  ++N I+D NNN + DE+ K N
Sbjct: 4   PRQLNVRKIKAFTGKENNSIADGNNNKLKDEHYKHN 39


>SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein ligase
           E3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1647

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 18/60 (30%), Positives = 31/60 (51%)
 Frame = +2

Query: 329 LNPQSDLTNNDDNEISDTNNNLILDEYLKANIMPMYPLPMKYLTNHNLTDNVKLTKIVNT 508
           LN QSD+ N+ +  +S+ + +  LD+  + +I+P     M+   N    D   LTK  N+
Sbjct: 128 LNKQSDILNSYERVLSNASVDSALDKKAEVDIIPFDKSVME-PKNITFNDKSGLTKFGNS 186


>SPAC1782.09c |clp1|flp1|Cdc14-related protein phosphatase
           Clp1/Flp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 537

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 16/43 (37%), Positives = 25/43 (58%)
 Frame = -3

Query: 228 ADMGTNRRDISTYIPHLNFQGPQRVSGHRRKCGALRVPNHISL 100
           A  GT++ +IST +P      P++VSGH     A R+P+  S+
Sbjct: 371 ATNGTSQSNISTPLPEPTPGQPRKVSGHNPP-SARRLPSASSV 412


>SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1679

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +1

Query: 490  YKDC*YHFADDNQTSLSKEYCXPIEAINYCFPLQN 594
            YKD  Y   +DN +  +K+Y   I   NY   L+N
Sbjct: 1645 YKDILYRCYEDNPSPKAKDYAEVIFGENYLSVLRN 1679


>SPCC1450.14c |ero12||ER oxidoreductin Ero1b|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 571

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 13/43 (30%), Positives = 23/43 (53%)
 Frame = +3

Query: 189 CTWRCRAGSYPYPQLGRPQQTESDAESPVHDATNRAVAEHMNL 317
           C   C++GS    + G P   ++D +S +HD  N + ++  NL
Sbjct: 22  CQVLCKSGSSV--KSGSPWSIKNDGKSIIHDTLNSSYSDIENL 62


>SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated protein
            Mug36|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1646

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = +2

Query: 323  VLLNPQSDLTNNDDNEISDTNNNLILDEYLKA 418
            +L+   SDL + +D EISD    L +++Y K+
Sbjct: 997  LLIKVLSDLGSTEDEEISDCYLALPIEDYAKS 1028


>SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1588

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 12/32 (37%), Positives = 14/32 (43%)
 Frame = -2

Query: 235  PSCGYGYEPARHLHVHPSPEFSRSAESIRTPP 140
            P C Y  E  RH H  P  E  +  + I T P
Sbjct: 1215 PICDYRVEVPRHSHRPPLIELQKMVDDIPTLP 1246


>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2609

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = +2

Query: 362  DNEISDTNNNLILDE 406
            DNEI D N+N I+DE
Sbjct: 1777 DNEIVDVNDNSIIDE 1791


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,555,037
Number of Sequences: 5004
Number of extensions: 51833
Number of successful extensions: 158
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)