Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060793.seq
(650 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0350 + 2534422-2535615 31 1.1
07_01_0217 + 1620625-1621419,1621982-1622152,1622581-1622865,162... 29 2.4
02_05_0300 + 27681204-27681656,27681745-27681840,27681933-276820... 29 2.4
04_04_1183 - 31537196-31537290,31537665-31537986,31538176-315382... 29 3.2
01_04_0113 - 16133794-16134933,16135030-16135611,16135698-16135853 28 5.6
07_03_1415 + 26410999-26411148,26411228-26411290,26412623-264126... 28 7.4
02_04_0010 + 18879133-18879168,18879460-18879553,18880350-188804... 28 7.4
01_04_0073 + 15724882-15724947,15725036-15725072,15725464-15725849 28 7.4
01_04_0071 + 15707810-15707875,15707964-15708000,15708392-15708777 28 7.4
01_03_0130 + 12853325-12853948,12854657-12854822,12854907-128551... 28 7.4
08_02_1393 - 26706198-26706592,26707055-26707301,26707407-267082... 27 9.8
>06_01_0350 + 2534422-2535615
Length = 397
Score = 30.7 bits (66), Expect = 1.1
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = -1
Query: 89 PWNSNAQAEKKTLPGPLGGVFRP 21
PW S+A+ E+K LP PL +F P
Sbjct: 42 PWRSSARLERKLLPPPLPWLFLP 64
>07_01_0217 +
1620625-1621419,1621982-1622152,1622581-1622865,
1623113-1623262
Length = 466
Score = 29.5 bits (63), Expect = 2.4
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = +1
Query: 118 NAKSTAFAAVSGYSLRTLKIQVRDVRGDVAPVRTHIRSW 234
+A S A++GYS TL++ DV G V TH+ W
Sbjct: 17 SAVSLVDGALAGYSAPTLRLLDIDVPGARLAVATHVAPW 55
>02_05_0300 +
27681204-27681656,27681745-27681840,27681933-27682022,
27682126-27682227,27682310-27682456,27683608-27683748,
27683749-27683808,27685133-27685230,27685308-27685410,
27685954-27686037
Length = 457
Score = 29.5 bits (63), Expect = 2.4
Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Frame = +3
Query: 99 EGRYGSEREEHRICGGVRILSADLENSGEGCT-WRC-RAGSYPYPQLGRPQQTESDAESP 272
+GR+G++R HR+ G +A SG+ C WR R +P P L + E+ A+ P
Sbjct: 6 DGRFGNKRVHHRL--GPANGAASSSTSGKVCIHWRAGRCNRFPCPYL-HSELPEATAKRP 62
>04_04_1183 -
31537196-31537290,31537665-31537986,31538176-31538277,
31538826-31539071,31539385-31539506,31539588-31540344,
31540447-31540770,31540872-31541052,31541208-31541602,
31541877-31541942,31542225-31542377,31542593-31542691,
31542776-31542982,31543432-31543572,31543852-31544019,
31544302-31544395,31544479-31544585,31545140-31545274,
31545549-31545656,31545975-31546049,31546197-31546262,
31546500-31546556,31546678-31546702,31546809-31546889,
31546966-31547080,31547211-31547370,31547444-31547483,
31547599-31547780,31547905-31548234
Length = 1650
Score = 29.1 bits (62), Expect = 3.2
Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
Frame = -2
Query: 397 DEVVVCIRYFIIVIVCQIRLW--VQKYTVR 314
+ +VVCI YF + VC R+W + YTV+
Sbjct: 34 ETLVVCISYFALFGVCFYRIWRTTRDYTVQ 63
>01_04_0113 - 16133794-16134933,16135030-16135611,16135698-16135853
Length = 625
Score = 28.3 bits (60), Expect = 5.6
Identities = 23/77 (29%), Positives = 32/77 (41%), Gaps = 2/77 (2%)
Frame = -2
Query: 226 GYGYEPARHLHVHPSPEFSRSAES-IRTPPQMRCSSRSEPYLPSIGF-HGTRTLRQKRKL 53
G+ P+ H P P+ S R PP R S RSE P + R + +
Sbjct: 26 GFDVTPSPHAEPSPRPQLRHDNPSRSRVPPLERVSRRSEVVFPPLDSPFQAPGYRSVQPV 85
Query: 52 FPDLSAASSGHFGLPRA 2
L A+ +G FG+P A
Sbjct: 86 SISLPASPTG-FGVPVA 101
>07_03_1415 +
26410999-26411148,26411228-26411290,26412623-26412694,
26412798-26412905,26413023-26413103,26413176-26413229,
26413282-26413315,26413405-26413451,26413538-26413747,
26413861-26413962,26414240-26414356,26414460-26414531,
26414645-26414719,26414866-26414970
Length = 429
Score = 27.9 bits (59), Expect = 7.4
Identities = 14/30 (46%), Positives = 16/30 (53%)
Frame = +2
Query: 296 GRRAHEPHRVLLNPQSDLTNNDDNEISDTN 385
G RAHE R P ++DDN ISD N
Sbjct: 239 GIRAHEWFRQDYTPAMPFDDDDDNNISDGN 268
>02_04_0010 +
18879133-18879168,18879460-18879553,18880350-18880435,
18881221-18881255,18881613-18881670,18881998-18882210
Length = 173
Score = 27.9 bits (59), Expect = 7.4
Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Frame = -1
Query: 383 LYQIFHYRHCLSDQTVGSE-VHG-EVHVLGDRAVGRVVHRTLCVALCLLWSSQL 228
LY F CL DQ + VH E V+ + + + C+A+ LLW SQL
Sbjct: 57 LYTTFGTIVCLGDQGMFYRLVHTMERIVIAGNCIAMALLTSNCIAIQLLWQSQL 110
>01_04_0073 + 15724882-15724947,15725036-15725072,15725464-15725849
Length = 162
Score = 27.9 bits (59), Expect = 7.4
Identities = 20/45 (44%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Frame = -3
Query: 336 GFRSTR*GSCARRPRGWSRRAPDSLRR-SLFVVVVPAADMGTNRR 205
G R+ G +RRP G SRR LRR S FV+ A G +RR
Sbjct: 90 GSRTALSGGGSRRPAGKSRRQSVDLRRGSTFVLGGGGAWCGGSRR 134
>01_04_0071 + 15707810-15707875,15707964-15708000,15708392-15708777
Length = 162
Score = 27.9 bits (59), Expect = 7.4
Identities = 20/45 (44%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Frame = -3
Query: 336 GFRSTR*GSCARRPRGWSRRAPDSLRR-SLFVVVVPAADMGTNRR 205
G R+ G +RRP G SRR LRR S FV+ A G +RR
Sbjct: 90 GSRTALSGGGSRRPAGKSRRQSVDLRRGSTFVLGGGGAWCGGSRR 134
>01_03_0130 +
12853325-12853948,12854657-12854822,12854907-12855118,
12855372-12855865,12856228-12856276,12856367-12856690
Length = 622
Score = 27.9 bits (59), Expect = 7.4
Identities = 17/65 (26%), Positives = 28/65 (43%)
Frame = -2
Query: 292 RLVASCTGLSASLSVCCGRPSCGYGYEPARHLHVHPSPEFSRSAESIRTPPQMRCSSRSE 113
RL++S T +A+ +V P P HLH P + +A + +S +
Sbjct: 17 RLLSSATAAAAAATVATATPLFPRCPHPHHHLHGRRLPFLASAASQQQQQSGQTAASPAT 76
Query: 112 PYLPS 98
P +PS
Sbjct: 77 PPIPS 81
>08_02_1393 -
26706198-26706592,26707055-26707301,26707407-26708249,
26708420-26709091
Length = 718
Score = 27.5 bits (58), Expect = 9.8
Identities = 21/75 (28%), Positives = 33/75 (44%), Gaps = 3/75 (4%)
Frame = +3
Query: 57 FLFCLSVRVPWNPIEGRYGSEREEHRICGGVRILSADLENSGEGCTWRCRAGSYPYPQ-- 230
+ C V+ G+E E H ICG + D+ +G +R R G +PY
Sbjct: 488 YFICRKVKAALKRYAKEKGTEYELHVICG----TNFDVPENGRYGYFRNRKG-FPYAHVN 542
Query: 231 -LGRPQQTESDAESP 272
L RP+ ++ D +P
Sbjct: 543 FLARPKGSQRDNTAP 557
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,957,576
Number of Sequences: 37544
Number of extensions: 361249
Number of successful extensions: 1287
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1243
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1286
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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