Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060793.seq
(650 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_41893| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.038
SB_27417| Best HMM Match : zf-CCHC (HMM E-Value=0.00021) 30 1.9
SB_13369| Best HMM Match : UPF0005 (HMM E-Value=0.3) 30 1.9
SB_12021| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.9
SB_35263| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.3
SB_57695| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.7
SB_7296| Best HMM Match : PHD (HMM E-Value=0.0013) 28 5.7
SB_55889| Best HMM Match : REJ (HMM E-Value=5.4e-07) 28 5.7
SB_18531| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.7
SB_50345| Best HMM Match : Cadherin (HMM E-Value=0) 28 7.6
SB_1065| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.6
>SB_41893| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 131
Score = 35.5 bits (78), Expect = 0.038
Identities = 24/59 (40%), Positives = 33/59 (55%), Gaps = 2/59 (3%)
Frame = -3
Query: 174 FQGPQRVSGHRRKCGALRVPNHISLL*DSMELERSG--RKENSSRTSRRRLQATLGYLV 4
F+G + +GH +KCGAL P+ L S S RKENSS+ R+RL+ L Y +
Sbjct: 15 FKGRRERTGHHKKCGAL--PSIKPYLQASRFQGESSLKRKENSSQGPRQRLRVRLRYRI 71
>SB_27417| Best HMM Match : zf-CCHC (HMM E-Value=0.00021)
Length = 538
Score = 29.9 bits (64), Expect = 1.9
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = -3
Query: 177 NFQGPQRVSGHRRKCGAL 124
NFQG + +GH +KCGAL
Sbjct: 130 NFQGRRERTGHHKKCGAL 147
>SB_13369| Best HMM Match : UPF0005 (HMM E-Value=0.3)
Length = 509
Score = 29.9 bits (64), Expect = 1.9
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = -2
Query: 244 CGRPSCGYGYEPARHLHVH 188
C RP Y + P+RHLH H
Sbjct: 371 CHRPRLSYHHRPSRHLHYH 389
>SB_12021| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 51
Score = 29.9 bits (64), Expect = 1.9
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = -3
Query: 177 NFQGPQRVSGHRRKCGAL 124
NFQG + +GH +KCGAL
Sbjct: 24 NFQGRRERTGHHKKCGAL 41
>SB_35263| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 314
Score = 28.7 bits (61), Expect = 4.3
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +2
Query: 308 HEPHRVLLNPQSDLTNNDDNEISDTNN 388
H + +N +SD N DN+ SD NN
Sbjct: 72 HHNQTITINDRSDKNNTSDNKNSDNNN 98
>SB_57695| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 51
Score = 28.3 bits (60), Expect = 5.7
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = -3
Query: 177 NFQGPQRVSGHRRKCGAL 124
NF+G + +GH +KCGAL
Sbjct: 24 NFKGRRERTGHHKKCGAL 41
>SB_7296| Best HMM Match : PHD (HMM E-Value=0.0013)
Length = 873
Score = 28.3 bits (60), Expect = 5.7
Identities = 13/24 (54%), Positives = 14/24 (58%)
Frame = -2
Query: 172 SRSAESIRTPPQMRCSSRSEPYLP 101
S SAE I TPPQM+ S P P
Sbjct: 472 SSSAEGINTPPQMQSMLYSPPIFP 495
>SB_55889| Best HMM Match : REJ (HMM E-Value=5.4e-07)
Length = 2008
Score = 28.3 bits (60), Expect = 5.7
Identities = 13/39 (33%), Positives = 17/39 (43%), Gaps = 4/39 (10%)
Frame = +3
Query: 111 GSEREEHRICGGVR----ILSADLENSGEGCTWRCRAGS 215
G RE R C +R + DLE CTW C+ +
Sbjct: 963 GGNRETGRTCSELRLQAQVTDLDLETGVPNCTWACQTST 1001
>SB_18531| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 133
Score = 28.3 bits (60), Expect = 5.7
Identities = 22/78 (28%), Positives = 32/78 (41%), Gaps = 4/78 (5%)
Frame = +3
Query: 105 RYGSEREEHRICGGVRILSAD--LENSGEGCTWRCRAGSYPYPQLGRPQQTES--DAESP 272
+Y R+ G++ AD EN E T R + Y ++G+ ES P
Sbjct: 38 KYMENRKRIHSTEGIKADDADHCYENPIE-MTPRAADSDHTYEEVGQSSTYESLKPVAGP 96
Query: 273 VHDATNRAVAEHMNLTVY 326
HDA + V+EH Y
Sbjct: 97 PHDAAKQKVSEHAQSNAY 114
>SB_50345| Best HMM Match : Cadherin (HMM E-Value=0)
Length = 1021
Score = 27.9 bits (59), Expect = 7.6
Identities = 16/43 (37%), Positives = 24/43 (55%)
Frame = +2
Query: 377 DTNNNLILDEYLKANIMPMYPLPMKYLTNHNLTDNVKLTKIVN 505
+TNN+LIL K P YP+P + +T + DN + IV+
Sbjct: 441 ETNNSLILHIEDKNRHTPTYPIPSRDIT---IIDNTQPATIVS 480
>SB_1065| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 161
Score = 27.9 bits (59), Expect = 7.6
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +2
Query: 299 RRAHEPHRVLLNPQSDLTNNDDNEISDTNNN 391
R E H V +P +D NN++N ++ NNN
Sbjct: 105 RDRQEDHGVQEDPNNDNDNNNNNNNNNNNNN 135
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,684,094
Number of Sequences: 59808
Number of extensions: 424953
Number of successful extensions: 2461
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 2116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2433
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1657237625
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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