Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060793.seq
         (650 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014134-1095|AAF52385.2|  433|Drosophila melanogaster CG16947-P...    31   1.8  
AF301149-1|AAG15387.1|  764|Drosophila melanogaster SR protein k...    30   3.1  
AE013599-2054|AAM68538.1|  607|Drosophila melanogaster CG8174-PC...    30   3.1  
AE013599-2053|AAM68537.1|  764|Drosophila melanogaster CG8174-PB...    30   3.1  
AE013599-2052|AAF58140.2|  764|Drosophila melanogaster CG8174-PA...    30   3.1  
AY060459-1|AAL25498.2|  315|Drosophila melanogaster SD03158p pro...    29   4.1  
Y07662-1|CAA68943.1|  949|Drosophila melanogaster GATA factor pr...    29   5.5  
X76217-1|CAA53807.1|  779|Drosophila melanogaster a box binding ...    29   5.5  

>AE014134-1095|AAF52385.2|  433|Drosophila melanogaster CG16947-PA
           protein.
          Length = 433

 Score = 30.7 bits (66), Expect = 1.8
 Identities = 15/50 (30%), Positives = 22/50 (44%)
 Frame = -2

Query: 283 ASCTGLSASLSVCCGRPSCGYGYEPARHLHVHPSPEFSRSAESIRTPPQM 134
           +S T  SA  ++    P      +P  H H HP+P   +  + I TP  M
Sbjct: 44  SSATTTSAEAALPASLPLAQIAQQPHTHPHPHPNPHLHQQHQLIVTPTTM 93


>AF301149-1|AAG15387.1|  764|Drosophila melanogaster SR protein
           kinase 1 protein.
          Length = 764

 Score = 29.9 bits (64), Expect = 3.1
 Identities = 17/57 (29%), Positives = 28/57 (49%)
 Frame = +2

Query: 311 EPHRVLLNPQSDLTNNDDNEISDTNNNLILDEYLKANIMPMYPLPMKYLTNHNLTDN 481
           E    L + Q++ +N+  N  S+TN++  L        MP+ P   K  +NH L +N
Sbjct: 488 ESSSALKSQQANGSNSTTNNKSNTNSSGTLKGQSNGKKMPLRPKQEKQGSNHQLNNN 544


>AE013599-2054|AAM68538.1|  607|Drosophila melanogaster CG8174-PC,
           isoform C protein.
          Length = 607

 Score = 29.9 bits (64), Expect = 3.1
 Identities = 17/57 (29%), Positives = 28/57 (49%)
 Frame = +2

Query: 311 EPHRVLLNPQSDLTNNDDNEISDTNNNLILDEYLKANIMPMYPLPMKYLTNHNLTDN 481
           E    L + Q++ +N+  N  S+TN++  L        MP+ P   K  +NH L +N
Sbjct: 331 ESSSALKSQQANGSNSTTNNKSNTNSSGTLKGQSNGKKMPLRPKQEKQGSNHQLNNN 387


>AE013599-2053|AAM68537.1|  764|Drosophila melanogaster CG8174-PB,
           isoform B protein.
          Length = 764

 Score = 29.9 bits (64), Expect = 3.1
 Identities = 17/57 (29%), Positives = 28/57 (49%)
 Frame = +2

Query: 311 EPHRVLLNPQSDLTNNDDNEISDTNNNLILDEYLKANIMPMYPLPMKYLTNHNLTDN 481
           E    L + Q++ +N+  N  S+TN++  L        MP+ P   K  +NH L +N
Sbjct: 488 ESSSALKSQQANGSNSTTNNKSNTNSSGTLKGQSNGKKMPLRPKQEKQGSNHQLNNN 544


>AE013599-2052|AAF58140.2|  764|Drosophila melanogaster CG8174-PA,
           isoform A protein.
          Length = 764

 Score = 29.9 bits (64), Expect = 3.1
 Identities = 17/57 (29%), Positives = 28/57 (49%)
 Frame = +2

Query: 311 EPHRVLLNPQSDLTNNDDNEISDTNNNLILDEYLKANIMPMYPLPMKYLTNHNLTDN 481
           E    L + Q++ +N+  N  S+TN++  L        MP+ P   K  +NH L +N
Sbjct: 488 ESSSALKSQQANGSNSTTNNKSNTNSSGTLKGQSNGKKMPLRPKQEKQGSNHQLNNN 544


>AY060459-1|AAL25498.2|  315|Drosophila melanogaster SD03158p
           protein.
          Length = 315

 Score = 29.5 bits (63), Expect = 4.1
 Identities = 17/57 (29%), Positives = 28/57 (49%)
 Frame = +2

Query: 311 EPHRVLLNPQSDLTNNDDNEISDTNNNLILDEYLKANIMPMYPLPMKYLTNHNLTDN 481
           E    L + Q++ +N+  N  S+TN++  L        MP+ P   K  +NH L +N
Sbjct: 39  ESSSALKSQQANGSNSATNNKSNTNSSGTLKGQSNGKKMPLRPKQEKQGSNHQLNNN 95


>Y07662-1|CAA68943.1|  949|Drosophila melanogaster GATA factor
           protein.
          Length = 949

 Score = 29.1 bits (62), Expect = 5.5
 Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 3/40 (7%)
 Frame = +2

Query: 308 HEPHRVLLNPQSDL---TNNDDNEISDTNNNLILDEYLKA 418
           H+ H    N  S L    NN++N  S+ NNN ++ +YL+A
Sbjct: 705 HQLHNNNNNNNSSLFNNNNNNNNSSSNENNNKLIQKYLQA 744


>X76217-1|CAA53807.1|  779|Drosophila melanogaster a box binding
           factor (ABF), alsocalled dGATA-b protein.
          Length = 779

 Score = 29.1 bits (62), Expect = 5.5
 Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 3/40 (7%)
 Frame = +2

Query: 308 HEPHRVLLNPQSDL---TNNDDNEISDTNNNLILDEYLKA 418
           H+ H    N  S L    NN++N  S+ NNN ++ +YL+A
Sbjct: 535 HQLHNNNNNNNSSLFNNNNNNNNSSSNENNNKLIQKYLQA 574


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,246,478
Number of Sequences: 53049
Number of extensions: 613138
Number of successful extensions: 2449
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2205
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2434
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2765538900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)