Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060793.seq
         (650 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL032647-7|CAA21691.2|  360|Caenorhabditis elegans Hypothetical ...    29   3.8  
Z48585-9|CAD59166.1|  347|Caenorhabditis elegans Hypothetical pr...    28   5.0  
U41534-3|AAB47595.1| 1119|Caenorhabditis elegans Hypothetical pr...    28   5.0  
Z70310-1|CAA94366.1|  552|Caenorhabditis elegans Hypothetical pr...    27   8.7  
U41019-1|AAM51510.1|  542|Caenorhabditis elegans Hypothetical pr...    27   8.7  

>AL032647-7|CAA21691.2|  360|Caenorhabditis elegans Hypothetical
           protein Y57A10B.4 protein.
          Length = 360

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 11/36 (30%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
 Frame = -2

Query: 433 HWHDVGFQIL-VQDEVVVCIRYFIIVIVCQIRLWVQ 329
           H + +GFQI  +   ++ CI  ++I+  CQI + ++
Sbjct: 23  HHNSIGFQITAISQFLIYCISAYVIIRTCQISVRIK 58


>Z48585-9|CAD59166.1|  347|Caenorhabditis elegans Hypothetical
           protein ZK673.11a protein.
          Length = 347

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 20/54 (37%), Positives = 25/54 (46%)
 Frame = -2

Query: 259 SLSVCCGRPSCGYGYEPARHLHVHPSPEFSRSAESIRTPPQMRCSSRSEPYLPS 98
           SLSV   +PS  YGY         P+PEF  S+      P +   + S P LPS
Sbjct: 156 SLSVY-EQPSGRYGYSAYNLCLPQPTPEFQSSSSGF--SPMLPAPTYSPPSLPS 206


>U41534-3|AAB47595.1| 1119|Caenorhabditis elegans Hypothetical
           protein C16A3.7 protein.
          Length = 1119

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = -2

Query: 361 VIVCQIRLWVQKYTVRFMCSATARLVASCTGLSASLSVCC 242
           VI C   L + K T  ++C+   R   SC G+     VCC
Sbjct: 537 VIPCDEYLQIMKTTGEYLCTKRCRKKKSC-GMHKCQEVCC 575


>Z70310-1|CAA94366.1|  552|Caenorhabditis elegans Hypothetical
           protein R11A8.1 protein.
          Length = 552

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 5/48 (10%)
 Frame = -1

Query: 170 KVRREYPDTAANAVLFA---FRT--ISPFYRIPWNSNAQAEKKTLPGP 42
           K+ +E  D A N +      FR   I+PF   P+ +N Q   + +PGP
Sbjct: 435 KIEKEIADVAENQIRRIEENFRNPFIAPFAFFPYQNNFQMAPQNVPGP 482


>U41019-1|AAM51510.1|  542|Caenorhabditis elegans Hypothetical
           protein C04E7.4 protein.
          Length = 542

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = -2

Query: 154 IRTPPQMRCSSRSEPYLPSIGFHGT 80
           I T  Q + SS  +P+LP++GF GT
Sbjct: 299 IVTISQGKASSLYDPHLPTVGFDGT 323


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,297,802
Number of Sequences: 27780
Number of extensions: 304328
Number of successful extensions: 1163
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1065
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1162
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1444744186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)