Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060793.seq
         (650 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g45900.1 68418.m05645 autophagy 7 (APG7) nearly identical to ...    29   3.5  
At2g29780.1 68415.m03618 kelch repeat-containing F-box family pr...    29   3.5  
At1g72520.1 68414.m08386 lipoxygenase, putative similar to lipox...    28   4.7  
At2g19150.1 68415.m02235 pectinesterase family protein contains ...    28   6.2  
At1g74770.1 68414.m08663 expressed protein                             28   6.2  
At1g63550.1 68414.m07184 hypothetical protein low similarity to ...    28   6.2  
At5g52530.2 68418.m06518 dentin sialophosphoprotein-related cont...    27   8.2  
At5g52530.1 68418.m06517 dentin sialophosphoprotein-related cont...    27   8.2  
At5g22390.1 68418.m02612 expressed protein                             27   8.2  
At4g14080.1 68417.m02173 glycosyl hydrolase family 17 protein / ...    27   8.2  
At1g10930.1 68414.m01255 DNA helicase (RECQl4A) nearly identical...    27   8.2  

>At5g45900.1 68418.m05645 autophagy 7 (APG7) nearly identical to
           autophagy 7 [Arabidopsis thaliana] GI:19912147; contains
           Pfam profile PF00899: ThiF family
          Length = 697

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 13/45 (28%), Positives = 25/45 (55%)
 Frame = -3

Query: 165 PQRVSGHRRKCGALRVPNHISLL*DSMELERSGRKENSSRTSRRR 31
           P  ++G    CG  +V NH++LL +S+ L+      ++S  +R +
Sbjct: 42  PISITGFYGPCGHPQVSNHLTLLSESLPLDEQSLIASTSHGNRNK 86


>At2g29780.1 68415.m03618 kelch repeat-containing F-box family
           protein similar to SKP1 interacting partner 6
           [Arabidopsis thaliana] GI:10716957; contains Pfam
           profiles PF01344: Kelch motif, PF00646: F-box domain
          Length = 398

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 21/66 (31%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
 Frame = +2

Query: 299 RRAHEPHRVLLNPQSDLTNNDDNEISDTNNNLILDE-YLKANI-MPMYPLPMKYLTNHNL 472
           +R H P   LL+    +  +   E+  T ++L L E  L A I  P +  P  ++ NHN+
Sbjct: 61  KRCHYPSLSLLSKAFRIVISSP-ELHQTRSSLNLTEPVLYALIGFPPHSFPNWFILNHNI 119

Query: 473 TDNVKL 490
           T N+ L
Sbjct: 120 TRNIPL 125


>At1g72520.1 68414.m08386 lipoxygenase, putative similar to
           lipoxygenase gi:1495804 [Solanum tuberosum], gi:1654140
           [Lycopersicon esculentum], GB:CAB56692 [Arabidopsis
           thaliana]
          Length = 926

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = -2

Query: 160 ESIRTPPQMRCSSRSEPYLPSIGFHGTRTLRQK 62
           +S +  P  R    ++PYLPS    G RTLR+K
Sbjct: 215 QSQKDHPSKRILFTNQPYLPSETPSGLRTLREK 247


>At2g19150.1 68415.m02235 pectinesterase family protein contains
           Pfam profile: PF01095 pectinesterase
          Length = 339

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +3

Query: 135 ICGGVRILSADLENSGEGCTWRCRAGSYP 221
           I GG+  +    ++  EGCT + R G YP
Sbjct: 185 ISGGIDFIFGGAQSIFEGCTLKLRVGIYP 213


>At1g74770.1 68414.m08663 expressed protein
          Length = 985

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 14/50 (28%), Positives = 27/50 (54%)
 Frame = -2

Query: 526 DYRLQNGINNLCKLNIVSQVMVR*IFHWQWIHWHDVGFQILVQDEVVVCI 377
           D R++N ++N    +  +  +   IFHW  +   ++G +  V  EV++CI
Sbjct: 99  DKRVKNIVSNYSLEHAGTDDLFTSIFHWLHVLEEEIGSRSDVLREVILCI 148


>At1g63550.1 68414.m07184 hypothetical protein low similarity to
           receptor-like protein kinase 5 [Arabidopsis thaliana]
           GI:13506747; contains Pfam profile: PF01657 Domain of
           unknown function DUF26
          Length = 299

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 21/57 (36%), Positives = 24/57 (42%), Gaps = 4/57 (7%)
 Frame = -2

Query: 256 LSVCCGRPSCGYGYEPARHLH----VHPSPEFSRSAESIRTPPQMRCSSRSEPYLPS 98
           +S CCG PS    + P   L     V  SP  S SA   R+PP       S P  PS
Sbjct: 197 ISTCCGLPSYAKIFTPKCLLRFQTSVLLSPPPSPSAPPPRSPPPKSSPPSSLPQTPS 253


>At5g52530.2 68418.m06518 dentin sialophosphoprotein-related
           contains weak similarity to dentin sialophosphoprotein
           precursor (Dentin matrix protein-3) (DMP- 3)
           (Swiss-Prot:P97399) [Mus musculus]
          Length = 828

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 15/53 (28%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
 Frame = +3

Query: 81  VPWNPI-EGRYGSEREEHRICGGVRILSADLENSGEGCTWRCRAGSYPYPQLG 236
           +PW P+ +G   S R   ++    R+ ++D+E+  +  T    AG    P+LG
Sbjct: 13  LPWKPVAKGSRSSTRRGKKLVK--RVAASDIESEDKSSTHTLVAGESKRPKLG 63


>At5g52530.1 68418.m06517 dentin sialophosphoprotein-related
           contains weak similarity to dentin sialophosphoprotein
           precursor (Dentin matrix protein-3) (DMP- 3)
           (Swiss-Prot:P97399) [Mus musculus]
          Length = 828

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 15/53 (28%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
 Frame = +3

Query: 81  VPWNPI-EGRYGSEREEHRICGGVRILSADLENSGEGCTWRCRAGSYPYPQLG 236
           +PW P+ +G   S R   ++    R+ ++D+E+  +  T    AG    P+LG
Sbjct: 13  LPWKPVAKGSRSSTRRGKKLVK--RVAASDIESEDKSSTHTLVAGESKRPKLG 63


>At5g22390.1 68418.m02612 expressed protein
          Length = 202

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = +3

Query: 39  ERSGKSFLFCLSVRVPWNPIEG 104
           + S KSFL  LS   PWNP +G
Sbjct: 17  DNSPKSFLDTLSSSSPWNPSKG 38


>At4g14080.1 68417.m02173 glycosyl hydrolase family 17 protein /
           anther-specific protein (A6) identical to probable
           glucan endo-1,3-beta-glucosidase A6 precursor SP:Q06915
           from [Arabidopsis thaliana]
          Length = 478

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = +2

Query: 380 TNNNLILDEYLKANIMPMYP 439
           ++N  I DE+++ NI+P YP
Sbjct: 104 SSNQTIADEWVRTNILPYYP 123


>At1g10930.1 68414.m01255 DNA helicase (RECQl4A) nearly identical to
           DNA Helicase [Arabidopsis thaliana] GI:11121449
          Length = 1188

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = -2

Query: 202 HLHVHPSPEFSRSAESIRTPPQMRCSSRSE 113
           H H   +P+ S S  S+RTPP  R +SR E
Sbjct: 229 HYHSTSTPQPSVSNFSLRTPPVDRSASRLE 258


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,509,281
Number of Sequences: 28952
Number of extensions: 280848
Number of successful extensions: 938
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 907
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 936
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1354097952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)