Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060792.seq
         (398 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22E12.11c |set3||histone lysine methyltransferase Set3|Schiz...    25   4.3  
SPCC825.04c |||N-acetyltransferase |Schizosaccharomyces pombe|ch...    25   5.7  
SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5 |Schizo...    24   7.6  
SPBC29A3.10c |atp14||F1-ATPase subunit H |Schizosaccharomyces po...    24   7.6  
SPCPB16A4.05c |||urease accessory protein UREG |Schizosaccharomy...    24   10.0 
SPAC222.11 |hem13||coproporphyrinogen III oxidase |Schizosacchar...    24   10.0 

>SPAC22E12.11c |set3||histone lysine methyltransferase
           Set3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 859

 Score = 25.0 bits (52), Expect = 4.3
 Identities = 11/15 (73%), Positives = 13/15 (86%)
 Frame = +2

Query: 233 RRAPTANKVSIAKVR 277
           RRA TAN+VS+AK R
Sbjct: 398 RRASTANRVSVAKDR 412


>SPCC825.04c |||N-acetyltransferase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 204

 Score = 24.6 bits (51), Expect = 5.7
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -2

Query: 67  QLAQHIPGRSTNKWL 23
           QL +HI GR+  KWL
Sbjct: 121 QLDEHIRGRNVGKWL 135


>SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1065

 Score = 24.2 bits (50), Expect = 7.6
 Identities = 8/24 (33%), Positives = 17/24 (70%)
 Frame = +3

Query: 186 DIEDIVSEFDRVSERIDELRQXIR 257
           D++D+V EF  + ++ +ELR  ++
Sbjct: 255 DLKDLVEEFQPILDKGEELRSDLK 278


>SPBC29A3.10c |atp14||F1-ATPase subunit H |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 103

 Score = 24.2 bits (50), Expect = 7.6
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = -3

Query: 186 PRAAPLEFVAMRRVISSFSFPNTPKYD 106
           P+A P E  A  +  S  S P  PKYD
Sbjct: 37  PKAVPSETAAEVKEWSMPSAPTAPKYD 63


>SPCPB16A4.05c |||urease accessory protein UREG |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 286

 Score = 23.8 bits (49), Expect = 10.0
 Identities = 8/23 (34%), Positives = 16/23 (69%)
 Frame = +3

Query: 147 HVALRQTLAARLADIEDIVSEFD 215
           H A+R+ ++  L  +E++ SEF+
Sbjct: 153 HAAIREDVSGNLVALEELQSEFN 175


>SPAC222.11 |hem13||coproporphyrinogen III oxidase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 312

 Score = 23.8 bits (49), Expect = 10.0
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +2

Query: 119 VLGKLNEDITRRIATNSSGAAR 184
           V GKLN+D  +R+  N  G  R
Sbjct: 70  VQGKLNQDAVQRMRANHEGIDR 91


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,173,674
Number of Sequences: 5004
Number of extensions: 15749
Number of successful extensions: 38
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 38
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 134126124
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)