Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060792.seq
         (398 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_01_0045 + 611166-612308                                             28   2.4  
10_01_0043 + 570340-571683                                             28   2.4  
08_02_0178 - 13853847-13854416                                         28   2.4  
03_05_0951 + 29093962-29094373,29095291-29095388,29095689-290960...    28   2.4  
06_03_1195 + 28311450-28312294,28312418-28312966,28314319-28314499     26   9.5  

>10_01_0045 + 611166-612308
          Length = 380

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 15/31 (48%), Positives = 18/31 (58%)
 Frame = +3

Query: 147 HVALRQTLAARLADIEDIVSEFDRVSERIDE 239
           HVA+ ++ A   ADI DIV    R  ERI E
Sbjct: 246 HVAVAKSGAVANADINDIVDIIRRAKERIPE 276


>10_01_0043 + 570340-571683
          Length = 447

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 15/31 (48%), Positives = 18/31 (58%)
 Frame = +3

Query: 147 HVALRQTLAARLADIEDIVSEFDRVSERIDE 239
           HVA+ ++ A   ADI DIV    R  ERI E
Sbjct: 308 HVAVAKSGAVANADINDIVDIIRRAKERIPE 338


>08_02_0178 - 13853847-13854416
          Length = 189

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = -3

Query: 300 SSPNTYXVLTLAMETLXAVGARRSSQTRGRI-QXQYPLCPRAAP 172
           S+P T   +  A +   AV A R+ QTR  I     P+ P+AAP
Sbjct: 27  SAPATSVQVPNAADMAKAVAAARALQTRAEILSTSQPVVPQAAP 70


>03_05_0951 +
           29093962-29094373,29095291-29095388,29095689-29096087,
           29096999-29097724,29097802-29097968,29098046-29098311,
           29098396-29098581,29099072-29099346,29099435-29099683
          Length = 925

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 14/28 (50%), Positives = 20/28 (71%)
 Frame = +2

Query: 305 EDNVKTLTAEVSELVERTKTFTEESRKR 388
           E  V  LT EV  LV+RT+ +TE++RK+
Sbjct: 848 EAKVSFLT-EVEHLVQRTREYTEKTRKK 874


>06_03_1195 + 28311450-28312294,28312418-28312966,28314319-28314499
          Length = 524

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 19/83 (22%), Positives = 36/83 (43%), Gaps = 3/83 (3%)
 Frame = -3

Query: 381 LLSSVKVLVRSTSSETSAVKVFTLSSXSSPN---TYXVLTLAMETLXAVGARRSSQTRGR 211
           +L +      +T++ T+    FTLS  ++PN   +      A++   A G  +S    GR
Sbjct: 97  VLRATTTTTTTTTTTTTTTNTFTLSFQANPNPPPSNLSNHTALDAAGAAGHTQSHVVVGR 156

Query: 210 IQXQYPLCPRAAPLEFVAMRRVI 142
              +    P   P+E +   R++
Sbjct: 157 HGIRIRPWPHPDPVEVMRAHRIM 179


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,630,119
Number of Sequences: 37544
Number of extensions: 103081
Number of successful extensions: 274
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 272
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 274
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 682720236
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)