Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060792.seq
         (398 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_13906| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.2  
SB_14837| Best HMM Match : UCH (HMM E-Value=1.10002e-42)               27   5.6  
SB_41836| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.5e-07)        26   9.8  
SB_31683| Best HMM Match : ApoC-I (HMM E-Value=1.8)                    26   9.8  
SB_8283| Best HMM Match : Aerolysin (HMM E-Value=2.5e-05)              26   9.8  
SB_52464| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   9.8  

>SB_13906| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1067

 Score = 27.9 bits (59), Expect = 3.2
 Identities = 14/43 (32%), Positives = 27/43 (62%)
 Frame = -3

Query: 384 FLLSSVKVLVRSTSSETSAVKVFTLSSXSSPNTYXVLTLAMET 256
           ++L +V +++ + S+ T+  +   +SS  SP T  VLT +ME+
Sbjct: 343 YMLLTV-LIIATNSTATTLAEAVAISSSVSPTTTSVLTSSMES 384


>SB_14837| Best HMM Match : UCH (HMM E-Value=1.10002e-42)
          Length = 1712

 Score = 27.1 bits (57), Expect = 5.6
 Identities = 20/43 (46%), Positives = 23/43 (53%)
 Frame = +2

Query: 116 GVLGKLNEDITRRIATNSSGAARGHRGYCX*IRPRV*EDRRAP 244
           GVLGK  +D+ RRI     GAA G RG+       V ED R P
Sbjct: 419 GVLGKRVQDLARRIKV-GHGAA-GSRGHSAQSGLAVYEDLRDP 459


>SB_41836| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.5e-07)
          Length = 1128

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 12/33 (36%), Positives = 21/33 (63%)
 Frame = +3

Query: 156 LRQTLAARLADIEDIVSEFDRVSERIDELRQXI 254
           LRQ +  + +DIE+ V E   + ++IDEL + +
Sbjct: 856 LRQIIEDKESDIEEQVMELIHLRDQIDELNRQL 888


>SB_31683| Best HMM Match : ApoC-I (HMM E-Value=1.8)
          Length = 804

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 17/45 (37%), Positives = 23/45 (51%)
 Frame = -3

Query: 270 LAMETLXAVGARRSSQTRGRIQXQYPLCPRAAPLEFVAMRRVISS 136
           L ME L +    R  Q+  +I+     C   APL FVA+RR + S
Sbjct: 361 LVMEKLTSKMMFRG-QSYTKIKTVVSACADQAPLSFVAVRRSVES 404


>SB_8283| Best HMM Match : Aerolysin (HMM E-Value=2.5e-05)
          Length = 547

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +2

Query: 284 YVFGXDXEDNVKTLTAEVSELVERTKTFTEES 379
           Y+ G +  +    +T  VSE VE T+T T E+
Sbjct: 232 YISGSERNNEDHEVTRTVSEQVESTRTVTHET 263


>SB_52464| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2529

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +2

Query: 284 YVFGXDXEDNVKTLTAEVSELVERTKTFTEES 379
           Y+ G +  +    +T  VSE VE T+T T E+
Sbjct: 96  YISGSERNNEDHEVTRTVSEQVESTRTVTHET 127


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,960,991
Number of Sequences: 59808
Number of extensions: 123629
Number of successful extensions: 373
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 353
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 373
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 703143849
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)