Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060792.seq
         (398 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U28941-5|AAM98026.2|  989|Caenorhabditis elegans Hypothetical pr...    27   6.5  
AY314775-1|AAQ84882.1|  971|Caenorhabditis elegans methuselah-li...    27   6.5  

>U28941-5|AAM98026.2|  989|Caenorhabditis elegans Hypothetical
           protein F31D5.4 protein.
          Length = 989

 Score = 26.6 bits (56), Expect = 6.5
 Identities = 15/46 (32%), Positives = 23/46 (50%)
 Frame = -3

Query: 357 VRSTSSETSAVKVFTLSSXSSPNTYXVLTLAMETLXAVGARRSSQT 220
           + STS+ TS V   T++S + P T  V T+   T  +     +S T
Sbjct: 253 IASTSTVTSIVTSTTVTSTTVPTTTVVTTVPTTTATSTSTSTASTT 298


>AY314775-1|AAQ84882.1|  971|Caenorhabditis elegans methuselah-like
           protein MTH-2 protein.
          Length = 971

 Score = 26.6 bits (56), Expect = 6.5
 Identities = 15/46 (32%), Positives = 23/46 (50%)
 Frame = -3

Query: 357 VRSTSSETSAVKVFTLSSXSSPNTYXVLTLAMETLXAVGARRSSQT 220
           + STS+ TS V   T++S + P T  V T+   T  +     +S T
Sbjct: 235 IASTSTVTSIVTSTTVTSTTVPTTTVVTTVPTTTATSTSTSTASTT 280


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,521,339
Number of Sequences: 27780
Number of extensions: 88151
Number of successful extensions: 218
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 210
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 218
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 619699724
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)