Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060792.seq
         (398 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g19050.1 68416.m02420 kinesin motor protein-related contains ...    28   2.0  
At4g21210.1 68417.m03066 expressed protein contains Pfam domain ...    27   6.1  
At2g03720.1 68415.m00332 universal stress protein (USP) family p...    27   6.1  

>At3g19050.1 68416.m02420 kinesin motor protein-related contains Pfam
            profile: PF00225 Kinesin motor domain; contains
            non-consensus splice site (GC) at intron 12
          Length = 2722

 Score = 28.3 bits (60), Expect = 2.0
 Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
 Frame = +3

Query: 147  HV-ALRQTLAARLADIEDIVSEFDRVSERIDELRQXIRSPSLKSE 278
            HV AL +TLA +  ++ED VS    +  R+ E ++  R+  + +E
Sbjct: 2082 HVEALEKTLALKTFELEDAVSHAQMLEVRLQESKEITRNLEVDTE 2126


>At4g21210.1 68417.m03066 expressed protein contains Pfam domain
           PF03618: Domain of unknown function (DUF299)
          Length = 403

 Score = 26.6 bits (56), Expect = 6.1
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +2

Query: 119 VLGKLNEDITRRIATNSSGAARG 187
           +LG + E I+  + TN SG +RG
Sbjct: 206 ILGPITESISSHLGTNPSGLSRG 228


>At2g03720.1 68415.m00332 universal stress protein (USP) family
           protein contains Pfam profile PF00582: universal stress
           protein family
          Length = 165

 Score = 26.6 bits (56), Expect = 6.1
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = +2

Query: 311 NVKTLTAEVSELVERTKTFTEESRKRXGG 397
           NVKT    V    E+ KT  EES+K+  G
Sbjct: 70  NVKTEIVVVETAEEKGKTIVEESKKQGAG 98


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,113,484
Number of Sequences: 28952
Number of extensions: 82249
Number of successful extensions: 226
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 223
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 226
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 575830496
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)