Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060791.seq
         (460 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1620.11 |mug87||nucleoporin Nic96 homolog|Schizosaccharomyce...    27   1.0  
SPCC188.07 |ccq1||telomere maintenence protein|Schizosaccharomyc...    27   1.4  
SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase Abc...    25   7.3  
SPBC11B10.06 |sws1||SWIM domain containing-Srs2 interacting prot...    24   9.7  
SPBP26C9.03c |||iron ion transporter |Schizosaccharomyces pombe|...    24   9.7  

>SPCC1620.11 |mug87||nucleoporin Nic96 homolog|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 851

 Score = 27.5 bits (58), Expect = 1.0
 Identities = 15/39 (38%), Positives = 23/39 (58%)
 Frame = -1

Query: 292 INFLYDNRYYFPTFSLKFSICSSSQGILKASXYFSESNN 176
           INFLY    YFPT ++ F+I  +  G+L+ +   S  +N
Sbjct: 491 INFLYP---YFPTDAVHFAITCAYYGLLRTAPSSSVVSN 526


>SPCC188.07 |ccq1||telomere maintenence protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 735

 Score = 27.1 bits (57), Expect = 1.4
 Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
 Frame = +3

Query: 117 CFGCDKNMNESVNIVAIVSKL-LDSEKYXEALSIPCDEEHIENFKENVG 260
           CF    N +  VNIV +V+ L   SE+  EA ++    E   NF+E +G
Sbjct: 345 CFQSSYNASFLVNIVGVVATLSSSSEENSEASNLSTLFEKSGNFEEILG 393


>SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase
           Abc2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1463

 Score = 24.6 bits (51), Expect = 7.3
 Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 6/59 (10%)
 Frame = +3

Query: 24  RYFVKVHTYLHYFTFNRRHW-----NMSNLQKILR*CFGCDKNMNESV-NIVAIVSKLL 182
           +YF +V    HYF F RR W     ++  +  +    + C K  NESV N+++I++  L
Sbjct: 29  QYFYEVRKRSHYFHF-RRFWTIWLKSLVIMVLLFTHIYDCYKT-NESVWNVLSIITYFL 85


>SPBC11B10.06 |sws1||SWIM domain containing-Srs2 interacting protein
           1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 209

 Score = 24.2 bits (50), Expect = 9.7
 Identities = 9/21 (42%), Positives = 16/21 (76%)
 Frame = +3

Query: 126 CDKNMNESVNIVAIVSKLLDS 188
           C+K+++ S  I +++S LLDS
Sbjct: 48  CNKDLDPSSTIRSVISSLLDS 68


>SPBP26C9.03c |||iron ion transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 584

 Score = 24.2 bits (50), Expect = 9.7
 Identities = 12/40 (30%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
 Frame = +3

Query: 144 ESVNIVAIVSKLLDSE-KYXEALSIPCDEEHIENFKENVG 260
           ES      +  L+D +    + L +P   EHI N+K   G
Sbjct: 446 ESSKEATEIQTLIDEDYALYQKLDLPLPHEHITNYKSTFG 485


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,599,211
Number of Sequences: 5004
Number of extensions: 28772
Number of successful extensions: 73
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 73
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 172312850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)