Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060791.seq
(460 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0997 - 7752634-7753128,7753280-7753708,7754403-7755196,775... 30 1.0
06_01_0982 + 7627420-7628141,7628190-7628643,7629167-7629823,762... 29 1.8
09_04_0697 + 19566182-19566851,19567565-19567598,19567677-195677... 29 2.4
09_02_0449 - 9461385-9461431,9461487-9461628,9461733-9461831,946... 29 2.4
10_07_0071 - 12597668-12597784,12597966-12598166,12598804-12599601 27 7.3
09_02_0143 + 4919791-4919893,4920743-4921072,4921479-4921537 27 9.6
06_02_0105 - 11893666-11895483,11895661-11896422 27 9.6
03_06_0643 + 35248597-35250585,35250663-35250773,35250867-352509... 27 9.6
03_06_0326 + 33150599-33150907,33151013-33151104,33151961-331520... 27 9.6
>06_01_0997 -
7752634-7753128,7753280-7753708,7754403-7755196,
7755247-7755574
Length = 681
Score = 29.9 bits (64), Expect = 1.0
Identities = 17/45 (37%), Positives = 22/45 (48%)
Frame = +3
Query: 138 MNESVNIVAIVSKLLDSEKYXEALSIPCDEEHIENFKENVGK*YR 272
M VN+ A L SE Y A ++P + I NFK +G YR
Sbjct: 247 MLHGVNLSASRIMQLMSELYGGARNVPYTRKDISNFKSKLGSEYR 291
>06_01_0982 +
7627420-7628141,7628190-7628643,7629167-7629823,
7629975-7630469
Length = 775
Score = 29.1 bits (62), Expect = 1.8
Identities = 17/45 (37%), Positives = 22/45 (48%)
Frame = +3
Query: 138 MNESVNIVAIVSKLLDSEKYXEALSIPCDEEHIENFKENVGK*YR 272
M VN+ A L SE Y A ++P + I NFK +G YR
Sbjct: 265 MLHGVNLSAGRIMQLMSELYGGARNVPYTRKDISNFKSKLGSEYR 309
>09_04_0697 +
19566182-19566851,19567565-19567598,19567677-19567725,
19567891-19567949,19568063-19568079,19568178-19568329,
19568459-19568548,19568793-19568886,19568976-19569127,
19569630-19569727,19570049-19570184,19570695-19570793,
19570898-19571029
Length = 593
Score = 28.7 bits (61), Expect = 2.4
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = -1
Query: 232 CSSSQGILKASXYFSESNNLETIATIF 152
C + + A+ YFSE +NL IATIF
Sbjct: 26 CRAGCSLAIAAYYFSEGSNLTFIATIF 52
>09_02_0449 -
9461385-9461431,9461487-9461628,9461733-9461831,
9462052-9462100,9462179-9462212,9462880-9463055,
9463094-9463532,9463784-9463971,9463988-9464496
Length = 560
Score = 28.7 bits (61), Expect = 2.4
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = -1
Query: 232 CSSSQGILKASXYFSESNNLETIATIF 152
C + + A+ YFSE +NL IATIF
Sbjct: 258 CRAGCSLAIAAYYFSEGSNLTFIATIF 284
>10_07_0071 - 12597668-12597784,12597966-12598166,12598804-12599601
Length = 371
Score = 27.1 bits (57), Expect = 7.3
Identities = 7/30 (23%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
Frame = -3
Query: 95 ITHIPVSSIK-CKIM*ICMYFYEIPWKYLT 9
++H+ + +IK C ++ +C++ Y++ W + +
Sbjct: 164 VSHVRLPNIKICALLLVCLFVYDVFWVFFS 193
>09_02_0143 + 4919791-4919893,4920743-4921072,4921479-4921537
Length = 163
Score = 26.6 bits (56), Expect = 9.6
Identities = 14/45 (31%), Positives = 25/45 (55%)
Frame = -1
Query: 259 PTFSLKFSICSSSQGILKASXYFSESNNLETIATIFTDSFMFLSH 125
P F+L+F SSS+ I++ +E N T A I+ +M++ +
Sbjct: 117 PLFTLEFDAPSSSKEIIEGKLNGAEINQGFTSARIYNFLYMWIKY 161
>06_02_0105 - 11893666-11895483,11895661-11896422
Length = 859
Score = 26.6 bits (56), Expect = 9.6
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = +2
Query: 272 VIIEKIDDDTLTIKPSLYAACEQLLSIIXXRSTPEEALLV 391
+I+E+ D T K YA+ LL + RSTP ++ L+
Sbjct: 793 IIVERSSDTKSTSKDDSYASVHPLLD-MSARSTPNDSALL 831
>03_06_0643 +
35248597-35250585,35250663-35250773,35250867-35250971,
35252215-35252304
Length = 764
Score = 26.6 bits (56), Expect = 9.6
Identities = 17/62 (27%), Positives = 30/62 (48%), Gaps = 3/62 (4%)
Frame = -1
Query: 292 INFLYDNRYYFPTFSLKFSICSSSQGI---LKASXYFSESNNLETIATIFTDSFMFLSHP 122
I FLY+NR+++ LK + + + + +F +S N ET F S++ L
Sbjct: 353 ITFLYENRHFWVPAFLKDTFWAGLSTVNHHESPNAFFEDSINPETKLVTFLSSYVNLLQN 412
Query: 121 KH 116
K+
Sbjct: 413 KY 414
>03_06_0326 +
33150599-33150907,33151013-33151104,33151961-33152057,
33152585-33152656,33152750-33152812,33152905-33153045,
33153603-33153698,33154120-33154404,33154692-33154851,
33154947-33155089,33155688-33155861,33156386-33156652,
33156737-33156856
Length = 672
Score = 26.6 bits (56), Expect = 9.6
Identities = 9/25 (36%), Positives = 16/25 (64%)
Frame = +3
Query: 21 PRYFVKVHTYLHYFTFNRRHWNMSN 95
P+YF +VHT + +N+ H++ N
Sbjct: 557 PKYFNRVHTGYEWNKYNQTHYDHDN 581
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,050,022
Number of Sequences: 37544
Number of extensions: 142766
Number of successful extensions: 266
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 263
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 266
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 907440304
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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