Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060791.seq
         (460 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF047663-5|AAC04446.2|  247|Caenorhabditis elegans Hypothetical ...    27   6.6  
Z70038-1|CAA93884.1| 2219|Caenorhabditis elegans Hypothetical pr...    27   8.7  
AF101313-1|AAC69223.1| 1802|Caenorhabditis elegans Abc transport...    27   8.7  

>AF047663-5|AAC04446.2|  247|Caenorhabditis elegans Hypothetical
           protein W09G12.8 protein.
          Length = 247

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = -1

Query: 244 KFSICSSSQGILKASXYFSESNNLETIATIFTDSFMFLSHPKH 116
           +F     S   +K S   S+SN +E    + TD++    HPKH
Sbjct: 137 RFGAFEGSNTPIKLSPQLSQSNYVEFTYDVVTDTYS--QHPKH 177


>Z70038-1|CAA93884.1| 2219|Caenorhabditis elegans Hypothetical
           protein ZK1067.2 protein.
          Length = 2219

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 12/23 (52%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
 Frame = -3

Query: 254 VFFEIFYMFFIT-RYTQGFXILL 189
           + FEIF++FF T RY  GF + L
Sbjct: 221 LLFEIFHLFFTTARYKGGFMLTL 243


>AF101313-1|AAC69223.1| 1802|Caenorhabditis elegans Abc transporter
            family protein 4 protein.
          Length = 1802

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -3

Query: 251  FFEIFYMFFITRYTQGFXILL 189
            F  IFY+F IT YT  F ++L
Sbjct: 1219 FDAIFYIFNITAYTHDFGVML 1239


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,675,840
Number of Sequences: 27780
Number of extensions: 154890
Number of successful extensions: 425
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 414
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 425
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 820565746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)