Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060791.seq
         (460 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g01760.1 68417.m00229 DC1 domain-containing protein similar t...    31   0.49 
At3g51120.1 68416.m05598 zinc finger (CCCH-type) family protein ...    30   0.86 
At1g14750.1 68414.m01763 cyclin, putative (SDS) identical to cyc...    29   2.0  
At1g52800.1 68414.m05968 oxidoreductase, 2OG-Fe(II) oxygenase fa...    28   2.6  
At4g33410.1 68417.m04748 signal peptide peptidase family protein...    27   6.1  
At2g21910.1 68415.m02603 cytochrome P450, putative                     27   8.1  
At1g03910.1 68414.m00376 expressed protein low similarity to cac...    27   8.1  

>At4g01760.1 68417.m00229 DC1 domain-containing protein similar to
           T15B16.10 similar to A. thaliana CHP-rich proteins
           encoded by T10M13, GenBank accession number AF001308
          Length = 667

 Score = 30.7 bits (66), Expect = 0.49
 Identities = 15/56 (26%), Positives = 24/56 (42%)
 Frame = -1

Query: 283 LYDNRYYFPTFSLKFSICSSSQGILKASXYFSESNNLETIATIFTDSFMFLSHPKH 116
           L++ R    T  +    CS+   I     Y  E   L+ +   F++ F+  SHP H
Sbjct: 443 LHNERLALVTSEVNIFGCSACHKIFNGFRYEHEDTKLDVLCGSFSEPFIHPSHPHH 498


>At3g51120.1 68416.m05598 zinc finger (CCCH-type) family protein
           contains Pfam domain, PF00642: Zinc finger
           C-x8-C-x5-C-x3-H type (and similar)
          Length = 1230

 Score = 29.9 bits (64), Expect = 0.86
 Identities = 14/20 (70%), Positives = 15/20 (75%)
 Frame = -3

Query: 158 DIHRLVHVFVTSKALAQYLL 99
           DIHRLV V  TSKA+A Y L
Sbjct: 438 DIHRLVQVVGTSKAIASYQL 457


>At1g14750.1 68414.m01763 cyclin, putative (SDS) identical to
           cyclin-like protein [Arabidopsis thaliana] GI:20302467;
           low similarity to SP|P30278 G2/mitotic-specific cyclin 2
           (B-like cyclin) (CycMs2 {Medicago sativa}; contains Pfam
           profiles PF00134: Cyclin, N-terminal domain, PF02984:
           Cyclin, C-terminal domain
          Length = 578

 Score = 28.7 bits (61), Expect = 2.0
 Identities = 16/43 (37%), Positives = 21/43 (48%)
 Frame = +3

Query: 123 GCDKNMNESVNIVAIVSKLLDSEKYXEALSIPCDEEHIENFKE 251
           G  K +   + IV  VS L  SEK+ E +S   D+E  E   E
Sbjct: 229 GSAKELKPELEIVGCVSDLACSEKFSEEVSDSLDDESSEQRSE 271


>At1g52800.1 68414.m05968 oxidoreductase, 2OG-Fe(II) oxygenase
           family protein similar to GS-AOP loci [GI:16118889,
           GI:16118887, GI:16118891, GI:16118893]; contains PF03171
           2OG-Fe(II) oxygenase superfamily domain
          Length = 314

 Score = 28.3 bits (60), Expect = 2.6
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = -2

Query: 345 RSCSHAAYKEGLIVRVSSSIFSMITDTIS 259
           RSC H    EG   R +  +FS +TD +S
Sbjct: 242 RSCEHRVTMEGDKTRYTLGLFSFLTDLVS 270


>At4g33410.1 68417.m04748 signal peptide peptidase family protein
           contains Pfam domain PF04258: Membrane protein of
           unknown function (DUF435)
          Length = 372

 Score = 27.1 bits (57), Expect = 6.1
 Identities = 8/30 (26%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
 Frame = -3

Query: 95  ITHIPVSSIK-CKIM*ICMYFYEIPWKYLT 9
           ++H+ + +IK C ++ +C++ Y+I W + +
Sbjct: 164 VSHVRLPNIKICAMLLVCLFVYDIFWVFFS 193


>At2g21910.1 68415.m02603 cytochrome P450, putative 
          Length = 510

 Score = 26.6 bits (56), Expect = 8.1
 Identities = 10/37 (27%), Positives = 20/37 (54%)
 Frame = -1

Query: 262 FPTFSLKFSICSSSQGILKASXYFSESNNLETIATIF 152
           F +FSL+   C    G++    +F+E+N +  +  +F
Sbjct: 139 FQSFSLRTITCKIKNGLVPVLDHFAEANTVFDLQDVF 175


>At1g03910.1 68414.m00376 expressed protein low similarity to cactin
           [Drosophila melanogaster] GI:7673675; expression
           supported by MPSS
          Length = 672

 Score = 26.6 bits (56), Expect = 8.1
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = +3

Query: 21  PRYFVKVHTYLHYFTFNRRHWNMSN 95
           P+YF +VHT   +  +N+ H++  N
Sbjct: 557 PKYFNRVHTGYEWNKYNQTHYDHDN 581


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,853,989
Number of Sequences: 28952
Number of extensions: 132069
Number of successful extensions: 288
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 286
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 288
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 762235320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)