Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060790.seq
         (642 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25H1.07 |||DUF1620 family protein|Schizosaccharomyces pombe|...    26   4.0  
SPAC5H10.05c |||FAD binding oxidoreductasde |Schizosaccharomyces...    26   4.0  
SPBC20F10.02c |||DUF1741 family protein|Schizosaccharomyces pomb...    26   5.3  
SPBC19C2.01 |cdc28|prp8|ATP-dependent RNA helicase Cdc28 |Schizo...    26   5.3  
SPBC19C7.11 |||ClC chloride channel |Schizosaccharomyces pombe|c...    26   5.3  
SPAC23H4.02 |ppk9||serine/threonine protein kinase Ppk9 |Schizos...    25   7.0  
SPAPJ691.02 |||yippee-like protein|Schizosaccharomyces pombe|chr...    25   7.0  
SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   9.3  

>SPAC25H1.07 |||DUF1620 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 885

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 10/45 (22%), Positives = 24/45 (53%)
 Frame = -3

Query: 388 WSLNISIKPR*LAAVTVSVSDTTPRFLNIAEFVTSFLYCLTDMSD 254
           W  + +I P  + +  + +SD  P+F  + ++  +F + + + SD
Sbjct: 461 WRYDFNINPESVESWLLDISDEDPKFAFVHQWNDAFSFYILNASD 505


>SPAC5H10.05c |||FAD binding oxidoreductasde |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 196

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 10/36 (27%), Positives = 19/36 (52%)
 Frame = -1

Query: 225 FGRIRKQFGLDDRNVVTFFGKGFNIHFVDYMVAVSW 118
           +G++    G   +N    +GKG  +H   YM++ +W
Sbjct: 89  YGQLYANDGRSSKNPTQNYGKGGLLHEHRYMISCTW 124


>SPBC20F10.02c |||DUF1741 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 600

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = +3

Query: 357 YLGLIEMFKDQFDNINVRNLIANNQTF 437
           YL + E+ K + +++ +RN +A  QTF
Sbjct: 70  YLYISEILKSKAESLRIRNSLATLQTF 96


>SPBC19C2.01 |cdc28|prp8|ATP-dependent RNA helicase Cdc28
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1055

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 5/31 (16%)
 Frame = +1

Query: 181  NVTVVKPKLFAY-----STKTYCGNITEVNP 258
            +V   KPK+  Y     +TK YC  ITE+ P
Sbjct: 997  SVAEKKPKVIIYFELVLTTKEYCRQITEIQP 1027


>SPBC19C7.11 |||ClC chloride channel |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 812

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 16/60 (26%), Positives = 32/60 (53%)
 Frame = -2

Query: 377 HFNQAQVVGGGYRVCIGHHSALSKHCRIRY*FLVLLDRHVGLTSVILPQ*VLVEYANSLG 198
           H +++ +  G Y + +G  ++LS    +    +V++    G  + ILP  ++V  ANS+G
Sbjct: 527 HGSESCITPGTYAL-LGAAASLSGIMHLTVTIVVIMFELTGALNFILPTVLVVALANSIG 585


>SPAC23H4.02 |ppk9||serine/threonine protein kinase Ppk9
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 532

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = +2

Query: 155 LKPLPKNVTTLRSSSP 202
           + P+P NV TLRSS P
Sbjct: 383 IPPIPSNVETLRSSLP 398


>SPAPJ691.02 |||yippee-like protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 131

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
 Frame = +3

Query: 15  VIRVEAKNDYSLLACTAV-YAYCCKCGQYIGRVSYASLQP 131
           VI +E K +        V + +CC+C  YIG    +S +P
Sbjct: 50  VIEMEPKTEQMSTGRFIVRHIHCCRCHTYIGWKYVSSYEP 89


>SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 860

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = +2

Query: 155 LKPLPKNVTTLRSSSPNCLRIRP 223
           +KPL + V   RSSS   LRI P
Sbjct: 789 MKPLEEKVPIYRSSSKQPLRIHP 811


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,747,135
Number of Sequences: 5004
Number of extensions: 58561
Number of successful extensions: 149
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)