Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060790.seq
         (642 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_1493| Best HMM Match : No HMM Matches (HMM E-Value=.)               32   0.34 
SB_10016| Best HMM Match : FliG_C (HMM E-Value=0.6)                    29   2.4  
SB_15366| Best HMM Match : rve (HMM E-Value=0.00011)                   29   3.2  
SB_33371| Best HMM Match : SRF-TF (HMM E-Value=2.4e-24)                24   4.0  
SB_59352| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.2  
SB_45719| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.2  
SB_28353| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.6  
SB_12590| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.6  
SB_45372| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.6  
SB_45181| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.4  
SB_43726| Best HMM Match : zf-C2H2 (HMM E-Value=3.5e-31)               28   7.4  
SB_8953| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   9.8  

>SB_1493| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 741

 Score = 32.3 bits (70), Expect = 0.34
 Identities = 16/47 (34%), Positives = 23/47 (48%)
 Frame = +3

Query: 15  VIRVEAKNDYSLLACTAVYAYCCKCGQYIGRVSYASLQPPYSLQSVY 155
           V+R E KN+   +     + Y   CG Y GRV   +L PP+    V+
Sbjct: 20  VLRKEKKNNSHWVFGNVFFKYRKSCGAYEGRVCKPNLTPPFGRVKVH 66


>SB_10016| Best HMM Match : FliG_C (HMM E-Value=0.6)
          Length = 198

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 13/50 (26%), Positives = 28/50 (56%)
 Frame = +3

Query: 285 LVTNSAMFRKRGVVSDTDTVTAANYLGLIEMFKDQFDNINVRNLIANNQT 434
           L T  +  R++ +V   DT+ + NY G++++F  +  N+ +R+ +    T
Sbjct: 86  LATKQSKVRRQKLVFKHDTLLSVNYFGVLKIFSGE-RNLQLRSSLVEGTT 134


>SB_15366| Best HMM Match : rve (HMM E-Value=0.00011)
          Length = 1178

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 14/44 (31%), Positives = 21/44 (47%)
 Frame = +1

Query: 55   LALLSTLTAVNAVNILAVFPTPAYSHHIVYKVYIEALAEKCHNV 186
            LA      AV A+ +  +FP  AY+H   YK+  + L    H +
Sbjct: 990  LAACCDAAAVQALRLGGLFPYCAYTHAYTYKMIADQLWSAMHEI 1033


>SB_33371| Best HMM Match : SRF-TF (HMM E-Value=2.4e-24)
          Length = 333

 Score = 24.2 bits (50), Expect(2) = 4.0
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = +3

Query: 57  CTAVYAYCCKC 89
           CT +YAY C C
Sbjct: 255 CTRIYAYVCAC 265



 Score = 23.0 bits (47), Expect(2) = 4.0
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = +3

Query: 54  ACTAVYAYCC 83
           ACT +YAY C
Sbjct: 246 ACTCIYAYLC 255


>SB_59352| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 879

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 19/64 (29%), Positives = 34/64 (53%), Gaps = 6/64 (9%)
 Frame = +3

Query: 183 RYGRQAQTVCVFDQNLLR*YYGS*SDMSVKQYKKL------VTNSAMFRKRGVVSDTDTV 344
           R   Q  T+ V  + +L+ Y  S   ++V+QYK L      +T+S+++R  G+V + D +
Sbjct: 156 RLQNQTATIKVNLKRMLK-YKSSALSLNVRQYKVLQAANWLITHSSLYRDEGIVLNNDWI 214

Query: 345 TAAN 356
              N
Sbjct: 215 NQYN 218


>SB_45719| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 429

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 14/32 (43%), Positives = 20/32 (62%)
 Frame = +3

Query: 258 DMSVKQYKKLVTNSAMFRKRGVVSDTDTVTAA 353
           D+ ++QYK +V N    R RG+  DTD+ T A
Sbjct: 234 DIEIEQYKDMV-NGLQQRIRGLEMDTDSTTMA 264


>SB_28353| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 156

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +1

Query: 511 PNRAWLRFGGKL*TR*APWRGNPVHHPNIWRNNFDDT 621
           P R   +FG  + T  A W+    H PN  + +FDD+
Sbjct: 35  PGRIMAKFGNGIETD-AEWKCTNKHSPNFQKTDFDDS 70


>SB_12590| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 760

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 14/51 (27%), Positives = 25/51 (49%)
 Frame = +1

Query: 55  LALLSTLTAVNAVNILAVFPTPAYSHHIVYKVYIEALAEKCHNVTVVKPKL 207
           LA      AV A+++  +FP  AY++   YK+  + L    H+V     ++
Sbjct: 387 LAACCDAAAVPALHLGGLFPYCAYTYTYTYKIIADQLWSAMHDVAAAAKRV 437


>SB_45372| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2973

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 15/51 (29%), Positives = 24/51 (47%)
 Frame = +1

Query: 55   LALLSTLTAVNAVNILAVFPTPAYSHHIVYKVYIEALAEKCHNVTVVKPKL 207
            LA      AV A+++  +FP  AYS+   YK+  + L    H V     ++
Sbjct: 1227 LAACCDAAAVPALHLGGLFPYCAYSYTYTYKMIADQLWSAMHEVAAAAKRV 1277


>SB_45181| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 747

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = -1

Query: 144 VDYMVAVSWRRKHGQYIDRIYSSKRRQQCKPAK 46
           V YM A SW  +H Q I +    K+ Q  KP K
Sbjct: 361 VRYMTA-SWTTRHSQSISKSNMDKQAQSIKPKK 392


>SB_43726| Best HMM Match : zf-C2H2 (HMM E-Value=3.5e-31)
          Length = 516

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 16/41 (39%), Positives = 20/41 (48%)
 Frame = -1

Query: 141 DYMVAVSWRRKHGQYIDRIYSSKRRQQCKPAKNSHFLLQPE 19
           DY+ + S    H  Y D + SS R  QC P  N   L QP+
Sbjct: 188 DYLGSSSLAHGHAMY-DSLGSSSRYPQCPPGFNPLALHQPK 227


>SB_8953| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 328

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 13/44 (29%), Positives = 25/44 (56%)
 Frame = +1

Query: 91  VNILAVFPTPAYSHHIVYKVYIEALAEKCHNVTVVKPKLFAYST 222
           + + +VF  P ++ H+V  V  EAL  + + + +V+  LF  S+
Sbjct: 242 IGVFSVFCLPFFTFHVVDAVTEEALENRFYALNIVQWLLFLNSS 285


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,303,467
Number of Sequences: 59808
Number of extensions: 465125
Number of successful extensions: 1075
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 998
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1075
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1620947750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)