Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060790.seq
         (642 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ855482-1|ABH88169.1|  116|Apis mellifera chemosensory protein ...    24   1.1  
AJ973399-1|CAJ01446.1|  116|Apis mellifera hypothetical protein ...    24   1.1  
DQ855486-1|ABH88173.1|  104|Apis mellifera chemosensory protein ...    24   1.4  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   1.9  
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    23   1.9  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   2.5  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           22   5.8  
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    21   7.7  

>DQ855482-1|ABH88169.1|  116|Apis mellifera chemosensory protein 1
           protein.
          Length = 116

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 6/20 (30%), Positives = 16/20 (80%)
 Frame = +3

Query: 372 EMFKDQFDNINVRNLIANNQ 431
           E++ D++D +N+  ++AN++
Sbjct: 21  ELYSDKYDYVNIDEILANDR 40


>AJ973399-1|CAJ01446.1|  116|Apis mellifera hypothetical protein
           protein.
          Length = 116

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 6/20 (30%), Positives = 16/20 (80%)
 Frame = +3

Query: 372 EMFKDQFDNINVRNLIANNQ 431
           E++ D++D +N+  ++AN++
Sbjct: 21  ELYSDKYDYVNIDEILANDR 40


>DQ855486-1|ABH88173.1|  104|Apis mellifera chemosensory protein 5
           protein.
          Length = 104

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = -3

Query: 355 LAAVTVSVSDTTPRFLNIAEFVTSFLYCLTD 263
           LA + V   D   +FL    +V   L+C+ D
Sbjct: 12  LALINVKAQDDISKFLKDRPYVQKQLHCILD 42


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 12/27 (44%), Positives = 13/27 (48%)
 Frame = -1

Query: 531 P*PGAIWIRAQDRTGGQTPTHNRQTLP 451
           P P  IW+RA     G  P   RQ LP
Sbjct: 31  PQPDIIWVRADGSAVGDVP-GLRQVLP 56


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -1

Query: 240 ITAISFGRIRKQFGLDDRNVVTFF 169
           +  I+FG +  QFG   + +V FF
Sbjct: 245 VFCITFGLVAGQFGAQGKLIVDFF 268


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = -1

Query: 117 RRKHGQYIDRIYSSKRRQQCKPAKNSHFL 31
           RR+  QY D +YS  R  +   A+  H L
Sbjct: 43  RRRWKQYQDTLYSGTRSSESLTAQAHHRL 71


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 8/13 (61%), Positives = 8/13 (61%)
 Frame = +1

Query: 499 LRPYPNRAWLRFG 537
           LRPYPN  W   G
Sbjct: 228 LRPYPNWEWHTVG 240


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 6/12 (50%), Positives = 9/12 (75%)
 Frame = +1

Query: 496 ILRPYPNRAWLR 531
           +L PYPN +W +
Sbjct: 104 LLEPYPNWSWAK 115


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 189,401
Number of Sequences: 438
Number of extensions: 4555
Number of successful extensions: 13
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19315974
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)