Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060790.seq
         (642 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g19900.1 68417.m02916 glycosyl transferase-related contains P...    33   0.16 
At2g24450.1 68415.m02922 fasciclin-like arabinogalactan family p...    29   2.6  
At1g11430.1 68414.m01313 plastid developmental protein DAG, puta...    29   3.5  
At4g09500.2 68417.m01562 glycosyltransferase family protein cont...    28   4.6  
At4g09500.1 68417.m01561 glycosyltransferase family protein cont...    28   4.6  
At3g06435.1 68416.m00743 Expressed protein                             28   6.1  
At2g22930.1 68415.m02723 glycosyltransferase family protein cont...    28   6.1  
At1g72520.1 68414.m08386 lipoxygenase, putative similar to lipox...    28   6.1  
At3g29630.1 68416.m03726 glycosyltransferase family protein cont...    27   8.0  
At2g44130.1 68415.m05489 kelch repeat-containing F-box family pr...    27   8.0  

>At4g19900.1 68417.m02916 glycosyl transferase-related contains Pfam
           profiles PF01535: PPR repeat, PF04572: Alpha
           1,4-glycosyltransferase conserved region, PF04488:
           Glycosyltransferase sugar-binding region containing DXD
           motif; several hypothetical proteins - Arabidopsis
           thaliana
          Length = 1302

 Score = 33.1 bits (72), Expect = 0.16
 Identities = 13/36 (36%), Positives = 25/36 (69%)
 Frame = +3

Query: 360 LGLIEMFKDQFDNINVRNLIANNQTFDLVVVEAFAD 467
           LGLIE  ++ FD ++VR ++ ++ ++ L+V+  F D
Sbjct: 796 LGLIEYAENVFDEMSVRGVVPDSSSYKLMVIGCFRD 831


>At2g24450.1 68415.m02922 fasciclin-like arabinogalactan family
           protein similar to fasciclin-like
           arabinogalactan-protein 1 [Arabidopsis thaliana]
           gi|13377776|gb|AAK20857
          Length = 280

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 3/61 (4%)
 Frame = +1

Query: 22  GLKQKMTILCWLALLSTLTAVNAVNILAV---FPTPAYSHHIVYKVYIEALAEKCHNVTV 192
           GLK   ++LC   LL+  + V+AVNI  V   +P  +    ++ K  +  +  K   +TV
Sbjct: 2   GLKVSSSLLCLTILLAVSSIVSAVNITRVLEKYPEFSTMTELLAKTELTPIINKRQTITV 61

Query: 193 V 195
           +
Sbjct: 62  L 62


>At1g11430.1 68414.m01313 plastid developmental protein DAG,
           putative similar to DAG protein, chloroplast precursor
           [Garden snapdragon] SWISS-PROT:Q38732
          Length = 232

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
 Frame = +1

Query: 97  ILAVFPT-PAYSHHIVYKVYIEALAEKCHNVTVVKPKLFAYSTKTYCG 237
           I+  FP  PA S   +   Y+  LA    ++   K  ++A+ST TY G
Sbjct: 92  IVMEFPKDPAPSRDQMIDTYLNTLATVLGSMEEAKKNMYAFSTTTYTG 139


>At4g09500.2 68417.m01562 glycosyltransferase family protein
           contains Pfam profile: PF00201 UDP-glucoronosyl and
           UDP-glucosyl transferase
          Length = 442

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = +1

Query: 106 VFPTPAYSHHIVYKVYIEALAEKCHNVTVVKPK 204
           +FP  A+ H I +      LAEK H VT + PK
Sbjct: 9   MFPWFAFGHMIPFLHLANKLAEKGHRVTFLLPK 41


>At4g09500.1 68417.m01561 glycosyltransferase family protein
           contains Pfam profile: PF00201 UDP-glucoronosyl and
           UDP-glucosyl transferase
          Length = 417

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = +1

Query: 106 VFPTPAYSHHIVYKVYIEALAEKCHNVTVVKPK 204
           +FP  A+ H I +      LAEK H VT + PK
Sbjct: 9   MFPWFAFGHMIPFLHLANKLAEKGHRVTFLLPK 41


>At3g06435.1 68416.m00743 Expressed protein
          Length = 200

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
 Frame = +1

Query: 10  VQLFGLKQKMTILCW--LALLSTLTAVNAVNILAVFPTPAYSHHIVYKVYI 156
           V++FG+   +T   W  +A L    AV AVN L +    +Y    V  +Y+
Sbjct: 21  VEVFGVNDPVTRFGWTIMAFLCVFGAVGAVNALEIQMDVSYLVMFVVAIYV 71


>At2g22930.1 68415.m02723 glycosyltransferase family protein
           contains Pfam profile: PF00201 UDP-glucoronosyl and
           UDP-glucosyl transferase
          Length = 442

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +1

Query: 106 VFPTPAYSHHIVYKVYIEALAEKCHNVTVVKPK 204
           +FP  A+ H I +      LAEK H +T + PK
Sbjct: 9   MFPWFAFGHMIPFLHLANKLAEKGHQITFLLPK 41


>At1g72520.1 68414.m08386 lipoxygenase, putative similar to
           lipoxygenase gi:1495804 [Solanum tuberosum], gi:1654140
           [Lycopersicon esculentum], GB:CAB56692 [Arabidopsis
           thaliana]
          Length = 926

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 14/26 (53%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
 Frame = +2

Query: 161 PLPKNVTTLRSSSPNCLRI-RPKLIA 235
           PLPK VTTL+ SS   LR   PK+++
Sbjct: 393 PLPKIVTTLQKSSEGLLRYDTPKIVS 418


>At3g29630.1 68416.m03726 glycosyltransferase family protein
           contains Pfam profile: PF00201 UDP-glucoronosyl and
           UDP-glucosyl transferase
          Length = 448

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +1

Query: 106 VFPTPAYSHHIVYKVYIEALAEKCHNVTVVKPK 204
           ++P   + H I Y      LAEK H VT + PK
Sbjct: 9   LYPWFGFGHMIPYLHLANKLAEKGHRVTFLAPK 41


>At2g44130.1 68415.m05489 kelch repeat-containing F-box family
           protein very low similarity to SP|Q9ER30 Kelch-related
           protein 1 (Sarcosin) {Rattus norvegicus}; contains Pfam
           profiles PF01344: Kelch motif, PF00646: F-box domain
          Length = 409

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = +3

Query: 483 GHLYDPAPVSKSRLATVWR 539
           G +YDPA  S SR+  VWR
Sbjct: 270 GEIYDPATDSWSRIDNVWR 288


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,582,843
Number of Sequences: 28952
Number of extensions: 315494
Number of successful extensions: 797
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 782
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 796
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1324661040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)