Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060789.seq
         (492 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0 |Schizosacch...    86   2e-18
SPAC3H1.04c |mdm31||mitochondrial inner membrane protein Mdm31|S...    28   0.88 
SPCC14G10.04 |||sequence orphan|Schizosaccharomyces pombe|chr 3|...    25   6.2  
SPAC2F7.03c |pom1||DYRK family protein kinase Pom1|Schizosacchar...    25   6.2  
SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr 1||...    25   6.2  
SPCP1E11.04c |pal1||membrane associated protein Pal1 |Schizosacc...    25   8.2  

>SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 312

 Score = 86.2 bits (204), Expect = 2e-18
 Identities = 40/75 (53%), Positives = 54/75 (72%)
 Frame = +3

Query: 237 GKKHNDRKAIKDHLDNNPALEKLLPHIKGNVGFVFTRGDLVEVRDKLLENKVQAPARPGA 416
           GK    R+A++  +++ P LE+LLP ++GNVGFVFT  DL EVR+ ++ N + APARP A
Sbjct: 54  GKNTMIRRAMRGIINDMPELERLLPVVRGNVGFVFTNADLKEVRETIIANVIAAPARPNA 113

Query: 417 IAPLXVVXPAHNTGL 461
           IAPL V  PA NTG+
Sbjct: 114 IAPLDVFVPAGNTGM 128



 Score = 59.3 bits (137), Expect = 3e-10
 Identities = 26/54 (48%), Positives = 37/54 (68%)
 Frame = +1

Query: 100 KSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGSSIVLMGKNTMIAK 261
           K+ YF K+  L ++Y   F+V  DNV SQQM  +R  LRG++ ++MGKNTMI +
Sbjct: 8   KAQYFEKLRSLFEKYNSLFVVNIDNVSSQQMHTVRKQLRGTAELIMGKNTMIRR 61


>SPAC3H1.04c |mdm31||mitochondrial inner membrane protein
           Mdm31|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 601

 Score = 27.9 bits (59), Expect = 0.88
 Identities = 12/42 (28%), Positives = 24/42 (57%)
 Frame = -3

Query: 373 LSRTSTRSPRVNTKPTLPLMCGNSFSRAGLLSRWSLMALRSL 248
           L +T  +S    + PTLP +   + S +G+LSR + + ++ +
Sbjct: 35  LKQTVLQSSSFKSFPTLPRLAARNISNSGILSRTTPVIIKQI 76


>SPCC14G10.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 497

 Score = 25.0 bits (52), Expect = 6.2
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +3

Query: 243 KHNDRKAIKDHLDNNPALEKLLPHIKGNVG 332
           +HN RK   +H D    LEK++    GN G
Sbjct: 140 RHN-RKKDNEHRDEMEGLEKVMKQRAGNTG 168


>SPAC2F7.03c |pom1||DYRK family protein kinase
           Pom1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1087

 Score = 25.0 bits (52), Expect = 6.2
 Identities = 13/45 (28%), Positives = 23/45 (51%)
 Frame = -3

Query: 454 VLWAGMTTXNGAMAPGRAGAWTLFSNSLSRTSTRSPRVNTKPTLP 320
           V  +G    + +MAP R+G+W   +N  S +  R+  +  K  +P
Sbjct: 226 VFSSGNHAYHASMAPKRSGSWR-HTNFHSTSHPRAASIGNKSGIP 269


>SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1101

 Score = 25.0 bits (52), Expect = 6.2
 Identities = 15/56 (26%), Positives = 24/56 (42%)
 Frame = +1

Query: 244 NTMIAKPSKTTWTTIQPSRNCCHTSRATLASCSPAETSLRSVTNCWRTKSKLQLVL 411
           N+    PS + W T+  SR     SR   +S SP+  S +        + K  L++
Sbjct: 181 NSWWEDPSNSYWKTVIGSREMFEDSRKKTSSPSPSFASSKDAGTIPAIQKKKSLLI 236


>SPCP1E11.04c |pal1||membrane associated protein Pal1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 425

 Score = 24.6 bits (51), Expect = 8.2
 Identities = 16/62 (25%), Positives = 29/62 (46%)
 Frame = +1

Query: 190 MQQIRISLRGSSIVLMGKNTMIAKPSKTTWTTIQPSRNCCHTSRATLASCSPAETSLRSV 369
           M++  +  + S I  +G N   +  S+T  T  +PS    H+S  T  S   + + L  +
Sbjct: 291 MEKAGLGRKNSLIRKLGLNRSASMMSRTPNTLNRPSNYRSHSSMGTRRSPLNSPSQLDPI 350

Query: 370 TN 375
           +N
Sbjct: 351 SN 352


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,097,145
Number of Sequences: 5004
Number of extensions: 41447
Number of successful extensions: 107
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 192109570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)