Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060789.seq
(492 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0215 - 1714224-1714364,1714795-1715187,1715279-1715377,171... 76 2e-14
12_01_0211 - 1601129-1601272,1601670-1602062,1602142-1602240,160... 75 2e-14
11_01_0210 - 1647922-1648065,1648459-1648851,1648930-1649028,164... 75 2e-14
11_01_0033 - 251730-251855,252068-252144,252228-252318,252644-25... 33 0.12
12_01_0032 - 266954-267079,267204-267245,267290-267366,267450-26... 32 0.22
11_06_0395 + 23088737-23088823,23090198-23090346,23090570-230907... 32 0.29
06_01_0090 - 724296-724532,724756-724938,725038-725088,725520-72... 30 1.2
02_01_0561 + 4120268-4120339,4121462-4121588,4121715-4121770,412... 29 1.5
11_01_0676 - 5511755-5511831,5512857-5513052,5513462-5513577,551... 29 2.0
06_01_0349 + 2529279-2530446,2532232-2533036,2533066-2533106,253... 29 2.0
02_05_0250 + 27153048-27154453,27154546-27154885 28 3.5
11_01_0355 + 2679561-2680985,2681183-2682295 28 4.7
07_03_0196 + 14995224-14995489,14995859-14995877,14996703-149968... 28 4.7
03_05_0907 + 28678909-28679253 28 4.7
11_08_0037 + 27859867-27860382,27860471-27861440,27861647-278619... 27 6.2
07_03_0396 + 17672009-17672339,17672408-17673087 27 6.2
05_03_0195 - 9560885-9561435,9561553-9561639,9562199-9563225 27 6.2
03_04_0216 + 18695292-18696139,18696217-18696339,18697027-186972... 27 6.2
03_02_0600 - 9748382-9748933,9749805-9749840,9751164-9751218,975... 27 6.2
02_01_0152 - 1070249-1070296,1070443-1070515,1070601-1070671,107... 27 6.2
10_01_0266 + 2816391-2818898,2818934-2819162,2819369-2819444,281... 27 8.2
>08_01_0215 -
1714224-1714364,1714795-1715187,1715279-1715377,
1716248-1716316,1716408-1716665
Length = 319
Score = 75.8 bits (178), Expect = 2e-14
Identities = 39/77 (50%), Positives = 51/77 (66%), Gaps = 2/77 (2%)
Frame = +3
Query: 237 GKKHNDRKAIKDHLDN--NPALEKLLPHIKGNVGFVFTRGDLVEVRDKLLENKVQAPARP 410
GK R+ IK H DN N +L+P + GNVG +FT+GDL EVR+++ + KV APAR
Sbjct: 57 GKNTLIRRCIKVHADNTGNKEFLELMPLLVGNVGLIFTKGDLKEVREEVAKYKVGAPARV 116
Query: 411 GAIAPLXVVXPAHNTGL 461
G +AP+ VV P NTGL
Sbjct: 117 GLVAPVDVVVPPGNTGL 133
Score = 70.5 bits (165), Expect = 7e-13
Identities = 36/61 (59%), Positives = 42/61 (68%)
Frame = +1
Query: 79 REDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGSSIVLMGKNTMIA 258
+ KA K Y K+ QLLDEY K I ADNVGS Q+Q+IR LRG SIVLMGKNT+I
Sbjct: 4 KRTKAEKKVAYDKKLCQLLDEYTKVLIAVADNVGSNQLQEIRKGLRGDSIVLMGKNTLIR 63
Query: 259 K 261
+
Sbjct: 64 R 64
>12_01_0211 -
1601129-1601272,1601670-1602062,1602142-1602240,
1602920-1602988,1603071-1603328
Length = 320
Score = 75.4 bits (177), Expect = 2e-14
Identities = 39/77 (50%), Positives = 51/77 (66%), Gaps = 2/77 (2%)
Frame = +3
Query: 237 GKKHNDRKAIKDHLDN--NPALEKLLPHIKGNVGFVFTRGDLVEVRDKLLENKVQAPARP 410
GK R+ IK H DN N +L+P + GNVG +FT+GDL EVR+++ + KV APAR
Sbjct: 57 GKNTLIRRCIKVHADNTGNKDFLELMPLLVGNVGLIFTKGDLKEVREEVAKYKVGAPARV 116
Query: 411 GAIAPLXVVXPAHNTGL 461
G +AP+ VV P NTGL
Sbjct: 117 GLVAPVDVVVPPGNTGL 133
Score = 70.5 bits (165), Expect = 7e-13
Identities = 36/61 (59%), Positives = 42/61 (68%)
Frame = +1
Query: 79 REDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGSSIVLMGKNTMIA 258
+ KA K Y K+ QLLDEY K I ADNVGS Q+Q+IR LRG SIVLMGKNT+I
Sbjct: 4 KRTKAEKKVAYDKKLCQLLDEYTKVLIAVADNVGSNQLQEIRKGLRGDSIVLMGKNTLIR 63
Query: 259 K 261
+
Sbjct: 64 R 64
>11_01_0210 -
1647922-1648065,1648459-1648851,1648930-1649028,
1649706-1649774,1649877-1650134
Length = 320
Score = 75.4 bits (177), Expect = 2e-14
Identities = 39/77 (50%), Positives = 51/77 (66%), Gaps = 2/77 (2%)
Frame = +3
Query: 237 GKKHNDRKAIKDHLDN--NPALEKLLPHIKGNVGFVFTRGDLVEVRDKLLENKVQAPARP 410
GK R+ IK H DN N +L+P + GNVG +FT+GDL EVR+++ + KV APAR
Sbjct: 57 GKNTLIRRCIKVHADNTGNKDFLELMPLLVGNVGLIFTKGDLKEVREEVAKYKVGAPARV 116
Query: 411 GAIAPLXVVXPAHNTGL 461
G +AP+ VV P NTGL
Sbjct: 117 GLVAPVDVVVPPGNTGL 133
Score = 70.5 bits (165), Expect = 7e-13
Identities = 36/61 (59%), Positives = 42/61 (68%)
Frame = +1
Query: 79 REDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGSSIVLMGKNTMIA 258
+ KA K Y K+ QLLDEY K I ADNVGS Q+Q+IR LRG SIVLMGKNT+I
Sbjct: 4 KRTKAEKKVAYDKKLCQLLDEYTKVLIAVADNVGSNQLQEIRKGLRGDSIVLMGKNTLIR 63
Query: 259 K 261
+
Sbjct: 64 R 64
>11_01_0033 -
251730-251855,252068-252144,252228-252318,252644-252704,
252800-252858,252955-253045,253238-253406,253760-253787
Length = 233
Score = 33.1 bits (72), Expect = 0.12
Identities = 20/73 (27%), Positives = 35/73 (47%), Gaps = 1/73 (1%)
Frame = +1
Query: 37 KFHRSPYATLSRMGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLR 216
K R+ TLS+ ++ K I ++ Y ++ DN+ +Q+++ +R L+
Sbjct: 3 KSKRNRPVTLSKTKKKPGLERKGKVVTDIKDAVEHYANAYVFTYDNMRNQKLKDLREQLK 62
Query: 217 GSS-IVLMGKNTM 252
SS I L GK M
Sbjct: 63 SSSRIFLAGKKVM 75
>12_01_0032 -
266954-267079,267204-267245,267290-267366,267450-267540,
267864-267924,268021-268079,268176-268266,268481-268698,
268818-268824,269013-269148,270064-270307
Length = 383
Score = 32.3 bits (70), Expect = 0.22
Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Frame = +1
Query: 49 SPYATLSRMGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGSS- 225
S TLS+ ++ K I ++ Y ++ DN+ +Q+++ +R L+ SS
Sbjct: 143 SSAVTLSKTKKKPGLERKGKVVTDIKDAVEHYANAYVFTYDNMRNQKLKDLREQLKSSSR 202
Query: 226 IVLMGKNTM 252
I L GK M
Sbjct: 203 IFLAGKKVM 211
>11_06_0395 + 23088737-23088823,23090198-23090346,23090570-23090708,
23090795-23090889,23090967-23091080,23091674-23091803,
23091931-23092052,23092889-23093007,23093946-23094034,
23094072-23094245,23094310-23094616,23094726-23095180,
23095334-23096315,23096381-23097396,23097757-23097792,
23098065-23098130
Length = 1359
Score = 31.9 bits (69), Expect = 0.29
Identities = 21/58 (36%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
Frame = +1
Query: 142 YPKCFI--VGADNVGSQQMQQIRISLRGSSIVLMGKNTMIAKPSKTTWTTIQPSRNCC 309
Y KC I VG DN+ Q MQQ R SL I+ P+K T + +Q C
Sbjct: 1292 YTKCLIISVGRDNIPWQWMQQNRTSLETLEILKPENLIWAVSPAKLTISEVQDVSPYC 1349
>06_01_0090 - 724296-724532,724756-724938,725038-725088,725520-725639,
725738-725840,726106-726264,726728-726846,726891-727004,
727119-727277,727404-727451,728464-728640,729064-729116,
729549-729661,729793-729873,729966-730081,730786-730905,
732321-732429,732593-732770,732852-732920,733102-733233,
733657-733766,733843-734003,734081-734171,734258-734355,
734499-734619,734732-734892,734985-735090,735142-735236,
735828-735852,736008-736084,736196-736282,736372-736421,
736558-736639,736735-736795,737064-737116,737206-737395,
737472-737595,737860-737962,738064-738156,740344-740422,
740508-740584,740915-741043,742614-742731,742816-742913,
743457-743546,744998-745123,745238-745351,745488-745611,
745865-746019,746104-746201,746357-746600
Length = 1926
Score = 29.9 bits (64), Expect = 1.2
Identities = 19/72 (26%), Positives = 35/72 (48%)
Frame = +3
Query: 180 LATDAADPYLATWLQYRAHGKKHNDRKAIKDHLDNNPALEKLLPHIKGNVGFVFTRGDLV 359
+++D Y + ++ HGK D++ L NP L + P + N +FTRGD +
Sbjct: 1254 VSSDGRKEYYSKLVKADVHGK---DQEIYSIKLPGNPKLGEGKPENQ-NHAIIFTRGDAI 1309
Query: 360 EVRDKLLENKVQ 395
+ D +N ++
Sbjct: 1310 QTIDMNQDNYLE 1321
>02_01_0561 +
4120268-4120339,4121462-4121588,4121715-4121770,
4121841-4121912,4122017-4122128,4122247-4122284,
4122412-4122513,4122619-4122675,4122755-4122826,
4122992-4123093,4123210-4123405,4123988-4124094,
4124497-4124691,4124771-4124857,4124905-4124913,
4125599-4125703,4126067-4126164,4126250-4126328,
4126912-4127000,4127086-4127200
Length = 629
Score = 29.5 bits (63), Expect = 1.5
Identities = 22/59 (37%), Positives = 32/59 (54%), Gaps = 6/59 (10%)
Frame = +3
Query: 288 PALEK-LLPHIKGN---VGFVFTRGDLVEV--RDKLLENKVQAPARPGAIAPLXVVXPA 446
PAL+K L H K VG + T GDL + + L+++KV P PGA+ + + PA
Sbjct: 131 PALDKDALWHFKPEKLGVGDIITGGDLYAIVNENTLMQHKVALP--PGAMGKISYIAPA 187
>11_01_0676 -
5511755-5511831,5512857-5513052,5513462-5513577,
5513752-5514597,5515515-5515766,5522344-5525206
Length = 1449
Score = 29.1 bits (62), Expect = 2.0
Identities = 18/54 (33%), Positives = 31/54 (57%), Gaps = 3/54 (5%)
Frame = +3
Query: 276 LDNNPALEKL-LPH--IKGNVGFVFTRGDLVEVRDKLLENKVQAPARPGAIAPL 428
L N AL+KL LPH ++GN+GF+ + + ++ D +L++ A P + L
Sbjct: 396 LGNIAALQKLVLPHNNLEGNMGFLSSLSECRQLEDLILDHNSFVGALPDHLGNL 449
>06_01_0349 +
2529279-2530446,2532232-2533036,2533066-2533106,
2533219-2533424
Length = 739
Score = 29.1 bits (62), Expect = 2.0
Identities = 19/61 (31%), Positives = 31/61 (50%)
Frame = +1
Query: 241 KNTMIAKPSKTTWTTIQPSRNCCHTSRATLASCSPAETSLRSVTNCWRTKSKLQLVLVPL 420
K+ M+A ++W +QP +R L S + LR+V WR+ ++LQ + PL
Sbjct: 392 KSCMMAAVQSSSWADLQPELLGLVLTR--LPSLAD-RVRLRAVCRPWRSNARLQPLPPPL 448
Query: 421 P 423
P
Sbjct: 449 P 449
>02_05_0250 + 27153048-27154453,27154546-27154885
Length = 581
Score = 28.3 bits (60), Expect = 3.5
Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
Frame = +1
Query: 178 GSQQMQQIRISLRGSSIV-LMGKNTMIAKPSKTTWTTIQPSRNCCHTSRATLASCSPAET 354
GS+ + + S RG + +MG+ + P+ +++ SR A+C PA T
Sbjct: 191 GSELTKCLECSERGRKVPGVMGREGKVPDPALQEEKSVEASREEAAVGSNEDANCDPAST 250
Query: 355 SLRSV 369
RSV
Sbjct: 251 GDRSV 255
>11_01_0355 + 2679561-2680985,2681183-2682295
Length = 845
Score = 27.9 bits (59), Expect = 4.7
Identities = 11/41 (26%), Positives = 21/41 (51%)
Frame = +1
Query: 277 WTTIQPSRNCCHTSRATLASCSPAETSLRSVTNCWRTKSKL 399
W ++ HTS TL+ SP+ +S+ T+C+ + +
Sbjct: 480 WNPMRNGSAPHHTSELTLSFSSPSPSSISGYTSCYNNNNMM 520
>07_03_0196 +
14995224-14995489,14995859-14995877,14996703-14996839,
14998365-14998457,15001597-15001932,15003035-15003503
Length = 439
Score = 27.9 bits (59), Expect = 4.7
Identities = 12/43 (27%), Positives = 18/43 (41%)
Frame = -2
Query: 416 GTRTSWSLDFVLQQFVTDLNEVSAGEHEANVALDVWQQFLEGW 288
G +WS F +LN +S H+ V L+ W + W
Sbjct: 197 GNAENWSSQGDKDDFYNELNTISEARHKNLVKLEGWCCHINAW 239
>03_05_0907 + 28678909-28679253
Length = 114
Score = 27.9 bits (59), Expect = 4.7
Identities = 12/22 (54%), Positives = 13/22 (59%)
Frame = -3
Query: 460 RPVLWAGMTTXNGAMAPGRAGA 395
RP+L NGA APG AGA
Sbjct: 53 RPLLHGSAAAANGASAPGNAGA 74
>11_08_0037 +
27859867-27860382,27860471-27861440,27861647-27861991,
27862074-27862693
Length = 816
Score = 27.5 bits (58), Expect = 6.2
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = +3
Query: 300 KLLPHIKGNVGFVFTRGDLVEVRDKLLENKVQAP 401
KLLP VGFV RG V+ +K+++ P
Sbjct: 464 KLLPLDANKVGFVNVRGPHVQAPEKIMDGDYTGP 497
>07_03_0396 + 17672009-17672339,17672408-17673087
Length = 336
Score = 27.5 bits (58), Expect = 6.2
Identities = 23/63 (36%), Positives = 29/63 (46%), Gaps = 6/63 (9%)
Frame = +1
Query: 244 NTMIAKPSKTTWTTIQPSR------NCCHTSRATLASCSPAETSLRSVTNCWRTKSKLQL 405
NT+IAK K TT+QP R N H A + +PAE + +N R K L
Sbjct: 120 NTVIAKTKKEQGTTVQPIRRPMADDNSSHNPSALPPTPAPAEAN-HGRSNIARDVQKSLL 178
Query: 406 VLV 414
V V
Sbjct: 179 VPV 181
>05_03_0195 - 9560885-9561435,9561553-9561639,9562199-9563225
Length = 554
Score = 27.5 bits (58), Expect = 6.2
Identities = 11/19 (57%), Positives = 15/19 (78%)
Frame = +1
Query: 100 KSNYFVKIIQLLDEYPKCF 156
+++Y VKII+LL EY CF
Sbjct: 68 RADYKVKIIELLKEYVDCF 86
>03_04_0216 +
18695292-18696139,18696217-18696339,18697027-18697222,
18697361-18697519
Length = 441
Score = 27.5 bits (58), Expect = 6.2
Identities = 14/42 (33%), Positives = 24/42 (57%)
Frame = +3
Query: 183 ATDAADPYLATWLQYRAHGKKHNDRKAIKDHLDNNPALEKLL 308
A +ADP + TWL++ N ++A +DH ++ AL L+
Sbjct: 373 AVGSADPTVCTWLRHWLLESSANGQRAREDH-GHDGALSNLM 413
>03_02_0600 -
9748382-9748933,9749805-9749840,9751164-9751218,
9751588-9751697,9751955-9752602
Length = 466
Score = 27.5 bits (58), Expect = 6.2
Identities = 13/38 (34%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Frame = +1
Query: 184 QQMQQIRISLRGSSIVLMGKNTMIAKPSK-TTWTTIQP 294
+Q+Q IR +L + +L+ KNT++ K + T W ++P
Sbjct: 74 KQLQGIRDTLPETCRLLVAKNTLVGKAIEGTPWEALKP 111
>02_01_0152 -
1070249-1070296,1070443-1070515,1070601-1070671,
1070768-1070874,1071836-1072007
Length = 156
Score = 27.5 bits (58), Expect = 6.2
Identities = 16/52 (30%), Positives = 24/52 (46%)
Frame = +3
Query: 228 RAHGKKHNDRKAIKDHLDNNPALEKLLPHIKGNVGFVFTRGDLVEVRDKLLE 383
R+ K RK HL N AL K+ V +G L+E+ D+L++
Sbjct: 82 RSEMKVTGKRKRNAQHLQENSALCKVCTSSNSFVVRCCVKGSLLEINDRLIK 133
>10_01_0266 +
2816391-2818898,2818934-2819162,2819369-2819444,
2819776-2819830,2822042-2822110,2823077-2823321,
2824029-2824065
Length = 1072
Score = 27.1 bits (57), Expect = 8.2
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = +1
Query: 25 CLVLKFHRSPYATLSRMGREDKATWKSNYFVKIIQLLDEYPK 150
CL L+F T R R K T K + II++L+ YP+
Sbjct: 812 CLFLEFLMLMTCTTIRNSRSFKFTHKKFGYWMIIEMLNSYPR 853
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,567,462
Number of Sequences: 37544
Number of extensions: 306036
Number of successful extensions: 895
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 875
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 894
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1023611560
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -