Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060789.seq
(492 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_15432| Best HMM Match : Ribosomal_L10 (HMM E-Value=3.1e-37) 107 4e-24
SB_36524| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.39
SB_38478| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.68
SB_33085| Best HMM Match : Trypsin (HMM E-Value=0) 30 0.90
SB_56875| Best HMM Match : LON (HMM E-Value=0) 30 1.2
SB_27892| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.6
SB_11799| Best HMM Match : Keratin_B2 (HMM E-Value=0.69) 29 2.8
SB_10357| Best HMM Match : zf-C2H2 (HMM E-Value=9.8e-38) 28 3.6
SB_56440| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.6
SB_27584| Best HMM Match : F5_F8_type_C (HMM E-Value=0) 28 3.6
SB_14859| Best HMM Match : SEA (HMM E-Value=0.01) 28 4.8
SB_26098| Best HMM Match : Smg4_UPF3 (HMM E-Value=1.6) 27 6.4
>SB_15432| Best HMM Match : Ribosomal_L10 (HMM E-Value=3.1e-37)
Length = 261
Score = 107 bits (258), Expect = 4e-24
Identities = 50/76 (65%), Positives = 59/76 (77%)
Frame = +3
Query: 237 GKKHNDRKAIKDHLDNNPALEKLLPHIKGNVGFVFTRGDLVEVRDKLLENKVQAPARPGA 416
GK RKAI+ HL+NNP LEKLLPHIKGN+GFVFT+ DL +VR ++ENKV APA+ G
Sbjct: 38 GKNTMIRKAIRGHLENNPDLEKLLPHIKGNIGFVFTKEDLADVRKIIMENKVAAPAKAGV 97
Query: 417 IAPLXVVXPAHNTGLG 464
IAP+ V PA NTGLG
Sbjct: 98 IAPIDVFVPAGNTGLG 113
Score = 70.9 bits (166), Expect = 5e-13
Identities = 34/45 (75%), Positives = 36/45 (80%)
Frame = +1
Query: 127 QLLDEYPKCFIVGADNVGSQQMQQIRISLRGSSIVLMGKNTMIAK 261
Q LDEYPK F+VG DNVGS+QMQ IR SLRG VLMGKNTMI K
Sbjct: 1 QYLDEYPKLFLVGVDNVGSKQMQTIRQSLRGQGEVLMGKNTMIRK 45
>SB_36524| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 214
Score = 31.5 bits (68), Expect = 0.39
Identities = 16/34 (47%), Positives = 21/34 (61%)
Frame = +3
Query: 255 RKAIKDHLDNNPALEKLLPHIKGNVGFVFTRGDL 356
RK +K HLDN P L K LP + G + + + GDL
Sbjct: 173 RKELKSHLDNLPDLSK-LPDVDGGLAPLPSAGDL 205
>SB_38478| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 218
Score = 30.7 bits (66), Expect = 0.68
Identities = 21/82 (25%), Positives = 37/82 (45%), Gaps = 1/82 (1%)
Frame = +1
Query: 46 RSPYATLSRMGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLR-GS 222
+S + T +G +K +S K+ L+ + K NVG +++ + S++
Sbjct: 10 KSEFCTFRTLGNLNKLLRRSQQVRKVDILVARHRKIDSESKSNVGFERVLERNKSIKKAK 69
Query: 223 SIVLMGKNTMIAKPSKTTWTTI 288
S M +NT+I S TW I
Sbjct: 70 SSRKMARNTLILNCSDITWQAI 91
>SB_33085| Best HMM Match : Trypsin (HMM E-Value=0)
Length = 537
Score = 30.3 bits (65), Expect = 0.90
Identities = 18/49 (36%), Positives = 27/49 (55%)
Frame = +1
Query: 214 RGSSIVLMGKNTMIAKPSKTTWTTIQPSRNCCHTSRATLASCSPAETSL 360
RGS ++G M KP +TT TT +P+ +RATL + AE ++
Sbjct: 252 RGSVTSIVGVIDMKFKPYRTTLTTGKPNPVALGNARATLYCSATAEPAV 300
>SB_56875| Best HMM Match : LON (HMM E-Value=0)
Length = 925
Score = 29.9 bits (64), Expect = 1.2
Identities = 21/62 (33%), Positives = 36/62 (58%), Gaps = 4/62 (6%)
Frame = +1
Query: 199 IRISLRGSSIVLMGKNTMIAKPSKTTWTTIQPSRNCC--HTSRA--TLASCSPAETSLRS 366
+R+S SS +L K+ I +PS++ + +P++ CC H + A L + S + TS+R
Sbjct: 10 VRLSAMFSSRLL--KSPHIFRPSRSISSLYRPAKQCCGLHKNAALYALVANSQSATSIRV 67
Query: 367 VT 372
VT
Sbjct: 68 VT 69
>SB_27892| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1441
Score = 29.5 bits (63), Expect = 1.6
Identities = 17/44 (38%), Positives = 22/44 (50%)
Frame = -1
Query: 360 QRGLRG*TRSQRCP*CVATVSRGLDCCPGGL*WLCDHCVFSHEH 229
QRG+ Q C C + V DCCPGG W CD+ + +H
Sbjct: 869 QRGIGYFLLQQHCE-CPSDVP---DCCPGG--WRCDNLLVVTDH 906
>SB_11799| Best HMM Match : Keratin_B2 (HMM E-Value=0.69)
Length = 430
Score = 28.7 bits (61), Expect = 2.8
Identities = 22/85 (25%), Positives = 38/85 (44%), Gaps = 1/85 (1%)
Frame = +1
Query: 148 KCFIVGADNVGSQQMQQIRISLRGSSIVLMGKNTMIAKPSKTTWTTIQPSRNCCHTSRAT 327
+C + V S +QQ +S+R + + +++ + +I+P+R C HTS
Sbjct: 320 RCCQHTSSKVLSAYVQQGVVSIRPARCCQHTSSKVLSAYVQQGVVSIRPARCCQHTSSKV 379
Query: 328 L-ASCSPAETSLRSVTNCWRTKSKL 399
L A S+R C T SK+
Sbjct: 380 LSAYVQQGVVSIRPARCCQHTSSKV 404
Score = 28.3 bits (60), Expect = 3.6
Identities = 21/79 (26%), Positives = 36/79 (45%), Gaps = 1/79 (1%)
Frame = +1
Query: 166 ADNVGSQQMQQIRISLRGSSIVLMGKNTMIAKPSKTTWTTIQPSRNCCHTSRATL-ASCS 342
+ V S +QQ +S+R + + +++ + +I+P+R C HTS L A
Sbjct: 301 SSKVLSAYVQQGVVSIRPARCCQHTSSKVLSAYVQQGVVSIRPARCCQHTSSKVLSAYVQ 360
Query: 343 PAETSLRSVTNCWRTKSKL 399
S+R C T SK+
Sbjct: 361 QGVVSIRPARCCQHTSSKV 379
Score = 28.3 bits (60), Expect = 3.6
Identities = 22/85 (25%), Positives = 38/85 (44%), Gaps = 1/85 (1%)
Frame = +1
Query: 148 KCFIVGADNVGSQQMQQIRISLRGSSIVLMGKNTMIAKPSKTTWTTIQPSRNCCHTSRAT 327
+C + V S +QQ +S+R + + +++ + +I+P+R C HTS
Sbjct: 345 RCCQHTSSKVLSAYVQQGVVSIRPARCCQHTSSKVLSAYVQQGVVSIRPARCCQHTSSKV 404
Query: 328 L-ASCSPAETSLRSVTNCWRTKSKL 399
L A S+R C T SK+
Sbjct: 405 LSAYVQQGVVSIRPARCCEHTSSKV 429
Score = 27.5 bits (58), Expect = 6.4
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = +1
Query: 283 TIQPSRNCCHTSRATLAS-CSPAETSLRSVTNCWRTKSKLQLVLVPL 420
+I+P+R C HTS L++ S+R C T SK+ V L
Sbjct: 71 SIRPARCCQHTSSKVLSTYVQQGVVSIRPARCCQHTSSKVLSTYVQL 117
Score = 27.1 bits (57), Expect = 8.4
Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Frame = +1
Query: 262 PSKTTWTTIQPSRNCCHTSRATL-ASCSPAETSLRSVTNCWRTKSKL 399
P + +I+P+R C HTS L A S+R C T SK+
Sbjct: 39 PPQQGVVSIRPARCCQHTSSKVLSAYVQQGVVSIRPARCCQHTSSKV 85
Score = 27.1 bits (57), Expect = 8.4
Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Frame = +1
Query: 283 TIQPSRNCCHTSRATL-ASCSPAETSLRSVTNCWRTKSKL 399
+I+P+R C HTS L A S+R C T SK+
Sbjct: 151 SIRPARYCQHTSSKVLSAYVQQGVVSIRPARCCQHTSSKV 190
>SB_10357| Best HMM Match : zf-C2H2 (HMM E-Value=9.8e-38)
Length = 509
Score = 28.3 bits (60), Expect = 3.6
Identities = 15/37 (40%), Positives = 20/37 (54%)
Frame = -3
Query: 385 FSNSLSRTSTRSPRVNTKPTLPLMCGNSFSRAGLLSR 275
FS+S + T KP +CG SFS++G LSR
Sbjct: 464 FSDSSTLTKRLRTHTGEKPYQCRICGMSFSQSGNLSR 500
>SB_56440| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1142
Score = 28.3 bits (60), Expect = 3.6
Identities = 15/58 (25%), Positives = 26/58 (44%)
Frame = +3
Query: 219 LQYRAHGKKHNDRKAIKDHLDNNPALEKLLPHIKGNVGFVFTRGDLVEVRDKLLENKV 392
++ R+HG + + +N LEK+L G + T VE +K +E K+
Sbjct: 25 MELRSHGFQCTSIPVLSFEFENLDKLEKMLSEPTEYGGIILTSARGVEAMEKCIEEKI 82
>SB_27584| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
Length = 7381
Score = 28.3 bits (60), Expect = 3.6
Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = +3
Query: 141 VPKMFHRGCR*RGLATDAADPYLAT-WLQYRAHGKK 245
VPKMFH RG+ T+A P + T +L+ R G++
Sbjct: 3856 VPKMFHGNRDNRGIKTNAIFPTIITRYLRIRPMGRR 3891
>SB_14859| Best HMM Match : SEA (HMM E-Value=0.01)
Length = 1776
Score = 27.9 bits (59), Expect = 4.8
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = +1
Query: 166 ADNVGSQQMQQIRISLRGSSIVLMGKNTMIAKPSKTT 276
+ +VGS + QQ+R + SS V G+N + P K+T
Sbjct: 1309 SSHVGSGRNQQVRKHVEVSSHVGSGRNQQVRHPLKST 1345
>SB_26098| Best HMM Match : Smg4_UPF3 (HMM E-Value=1.6)
Length = 342
Score = 27.5 bits (58), Expect = 6.4
Identities = 15/35 (42%), Positives = 18/35 (51%)
Frame = +1
Query: 271 TTWTTIQPSRNCCHTSRATLASCSPAETSLRSVTN 375
TTWT ++ S R LA CS TS R+ TN
Sbjct: 67 TTWTALRGSTTSYRRRRTFLAPCS-INTSQRTSTN 100
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,322,416
Number of Sequences: 59808
Number of extensions: 345466
Number of successful extensions: 1022
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 907
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1020
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1050596726
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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