Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060789.seq
         (492 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY705405-1|AAU12514.1|  519|Anopheles gambiae nicotinic acetylch...    24   3.2  
AF316638-1|AAG45166.1|  211|Anopheles gambiae glutathione S-tran...    23   5.7  
AB097148-1|BAC82627.1|  357|Anopheles gambiae gag-like protein p...    23   5.7  
AY027891-1|AAK15783.1|  801|Anopheles gambiae collagen IV alpha ...    22   9.9  

>AY705405-1|AAU12514.1|  519|Anopheles gambiae nicotinic
           acetylcholine receptor subunitbeta 1 protein.
          Length = 519

 Score = 23.8 bits (49), Expect = 3.2
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = -2

Query: 317 DVWQQFLEGWIVVQVVFDGFAIIVFFPMST 228
           D++ Q  E W  V +V D   + +FF ++T
Sbjct: 461 DLYIQTREDWKYVAMVIDRLQLYIFFIVTT 490


>AF316638-1|AAG45166.1|  211|Anopheles gambiae glutathione
           S-transferase D12 protein.
          Length = 211

 Score = 23.0 bits (47), Expect = 5.7
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +3

Query: 258 KAIKDHLDNNPALEKLLPHIKGNVGFV 338
           +A+  HL NNP  ++ L  +K  V  V
Sbjct: 109 QAVLSHLRNNPITDEHLAKVKRGVEIV 135


>AB097148-1|BAC82627.1|  357|Anopheles gambiae gag-like protein
           protein.
          Length = 357

 Score = 23.0 bits (47), Expect = 5.7
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = -1

Query: 378 TVCHGPQRGLRG*TRSQRCP*CVATVSRGLDC 283
           T+C G   G+    ++Q C  C A V  GL+C
Sbjct: 12  TLC-GEVTGVSYRGQAQTCRNCAAPVHHGLNC 42


>AY027891-1|AAK15783.1|  801|Anopheles gambiae collagen IV alpha 1
           chain precursor protein.
          Length = 801

 Score = 22.2 bits (45), Expect = 9.9
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +3

Query: 309 PHIKGNVGFVFTRGD 353
           P +KGNVG+   +GD
Sbjct: 734 PGLKGNVGYSGDKGD 748


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 530,077
Number of Sequences: 2352
Number of extensions: 9623
Number of successful extensions: 37
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37
length of database: 563,979
effective HSP length: 60
effective length of database: 422,859
effective search space used: 43554477
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)