Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060789.seq
         (492 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z79754-9|CAB02098.1|  312|Caenorhabditis elegans Hypothetical pr...    98   3e-21
U41264-4|AAA82424.1|  220|Caenorhabditis elegans Hypothetical pr...    30   0.79 
AC006770-2|AAF60593.1| 1145|Caenorhabditis elegans Hypothetical ...    29   2.4  
U53154-2|AAC25856.1|  358|Caenorhabditis elegans Hypothetical pr...    28   3.2  

>Z79754-9|CAB02098.1|  312|Caenorhabditis elegans Hypothetical
           protein F25H2.10 protein.
          Length = 312

 Score = 97.9 bits (233), Expect = 3e-21
 Identities = 40/63 (63%), Positives = 54/63 (85%)
 Frame = +1

Query: 73  MGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGSSIVLMGKNTM 252
           M RED++TWK+NYF K+++L +EYPKC +VG DNVGS+QMQ+IR ++RG + +LMGKNTM
Sbjct: 1   MVREDRSTWKANYFTKLVELFEEYPKCLLVGVDNVGSKQMQEIRQAMRGHAEILMGKNTM 60

Query: 253 IAK 261
           I K
Sbjct: 61  IRK 63



 Score = 97.9 bits (233), Expect = 3e-21
 Identities = 47/76 (61%), Positives = 55/76 (72%)
 Frame = +3

Query: 237 GKKHNDRKAIKDHLDNNPALEKLLPHIKGNVGFVFTRGDLVEVRDKLLENKVQAPARPGA 416
           GK    RKA++ HL  NP+LEKLLPHI  NVGFVFT+ DL E+R KLLEN+  APA+ GA
Sbjct: 56  GKNTMIRKALRGHLGKNPSLEKLLPHIVENVGFVFTKEDLGEIRSKLLENRKGAPAKAGA 115

Query: 417 IAPLXVVXPAHNTGLG 464
           IAP  V  P  NTG+G
Sbjct: 116 IAPCDVKLPPQNTGMG 131


>U41264-4|AAA82424.1|  220|Caenorhabditis elegans Hypothetical
           protein F10E7.5 protein.
          Length = 220

 Score = 30.3 bits (65), Expect = 0.79
 Identities = 19/71 (26%), Positives = 36/71 (50%)
 Frame = +1

Query: 46  RSPYATLSRMGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGSS 225
           R    +L+++ ++ K T K+N   ++   +D+Y   FI    N+ S +   IR   + +S
Sbjct: 6   RDKNVSLTKVKKKTKDT-KNNLVNEVRASVDQYKNLFIFTIANMRSTRFIAIRQKYKENS 64

Query: 226 IVLMGKNTMIA 258
               GKN +I+
Sbjct: 65  RFFFGKNNVIS 75



 Score = 26.6 bits (56), Expect = 9.8
 Identities = 17/50 (34%), Positives = 22/50 (44%)
 Frame = +3

Query: 294 LEKLLPHIKGNVGFVFTRGDLVEVRDKLLENKVQAPARPGAIAPLXVVXP 443
           L K    +KG  G +FT     EV  +  E   +  AR G +A   VV P
Sbjct: 90  LHKASAILKGQCGLMFTNMSKKEVEAEFSEASEEDYARVGDVATETVVLP 139


>AC006770-2|AAF60593.1| 1145|Caenorhabditis elegans Hypothetical
           protein Y46B2A.3 protein.
          Length = 1145

 Score = 28.7 bits (61), Expect = 2.4
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = -3

Query: 436 TTXNGAMAPGRAGAWTLFSNSLSRTSTRSPRVNTKPT 326
           TT      P  AG WT+ +N ++R  TR P    +PT
Sbjct: 192 TTRGFTQRPTAAG-WTIRANGITRGQTRVPGTTREPT 227


>U53154-2|AAC25856.1|  358|Caenorhabditis elegans Hypothetical
           protein C33G8.12 protein.
          Length = 358

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 15/38 (39%), Positives = 25/38 (65%)
 Frame = +1

Query: 28  LVLKFHRSPYATLSRMGREDKATWKSNYFVKIIQLLDE 141
           L+ K   S ++ +SR+ +EDK +  SN+++K  QLL E
Sbjct: 156 LLWKLGESIFSDVSRLSKEDKNSMISNFYIK-WQLLME 192


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,692,961
Number of Sequences: 27780
Number of extensions: 235616
Number of successful extensions: 761
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 737
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 761
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 924715866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)