Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060789.seq
         (492 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    24   1.0  
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    23   1.3  
L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein pro...    22   3.1  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    21   5.4  
AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     21   5.4  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   5.4  

>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 23.8 bits (49), Expect = 1.0
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = -2

Query: 317 DVWQQFLEGWIVVQVVFDGFAIIVFFPMST 228
           D++ Q  E W  V +V D   + +FF ++T
Sbjct: 462 DLYIQTREDWKYVAMVIDRLQLYIFFLVTT 491


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 23.4 bits (48), Expect = 1.3
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -2

Query: 311 WQQFLEGWIVVQVVFDGFAIIVFFPMSTILE 219
           W+  L G  +  +  DG+ I+ F  MS+I E
Sbjct: 235 WKDGLFGLSLSALQTDGYKILYFHAMSSIAE 265


>L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein
           protein.
          Length = 81

 Score = 22.2 bits (45), Expect = 3.1
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -3

Query: 346 RVNTKPTLPLMCGNSFSRAGLL 281
           R +T P    +CG +FSR  LL
Sbjct: 37  RTHTLPCKCHLCGKAFSRPWLL 58


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 21.4 bits (43), Expect = 5.4
 Identities = 6/17 (35%), Positives = 12/17 (70%)
 Frame = +1

Query: 97  WKSNYFVKIIQLLDEYP 147
           W+   F  ++++LDE+P
Sbjct: 862 WRHWKFPNLVEVLDEFP 878


>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 21.4 bits (43), Expect = 5.4
 Identities = 7/18 (38%), Positives = 10/18 (55%)
 Frame = -1

Query: 408 DELELGLCSPTVCHGPQR 355
           D +E G+  PT C G  +
Sbjct: 361 DAVEYGIIGPTTCMGDHK 378


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.4 bits (43), Expect = 5.4
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = +2

Query: 257 QSHQRPPGQQSSPRETVATHQGQRWLR 337
           Q H RP  QQ   ++     Q +R LR
Sbjct: 157 QDHHRPYQQQQQQQQRQQQRQEERRLR 183


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 143,075
Number of Sequences: 438
Number of extensions: 3145
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13544190
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)