Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060789.seq
(492 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g11250.1 68416.m01368 60S acidic ribosomal protein P0 (RPP0C)... 71 4e-13
At3g09200.1 68416.m01094 60S acidic ribosomal protein P0 (RPP0B)... 71 4e-13
At2g40010.1 68415.m04916 60S acidic ribosomal protein P0 (RPP0A) 70 1e-12
At4g33330.1 68417.m04740 glycogenin glucosyltransferase (glycoge... 29 1.3
At4g31770.1 68417.m04508 calcineurin-like phosphoesterase family... 29 1.3
At1g51860.1 68414.m05846 leucine-rich repeat protein kinase, put... 29 1.3
At1g60250.1 68414.m06785 zinc finger (B-box type) family protein... 29 1.7
At3g50610.1 68416.m05534 hypothetical protein 29 2.2
At5g13260.1 68418.m01523 expressed protein 28 3.0
At3g56700.1 68416.m06307 male sterility protein, putative simila... 28 3.9
At2g29000.1 68415.m03527 leucine-rich repeat family protein / pr... 27 6.9
At1g07200.1 68414.m00766 ATP-dependent Clp protease ClpB protein... 27 6.9
At5g59650.1 68418.m07479 leucine-rich repeat protein kinase, put... 27 9.1
At4g34040.1 68417.m04830 zinc finger (C3HC4-type RING finger) fa... 27 9.1
At3g02260.1 68416.m00207 auxin transport protein (BIG) nearly id... 27 9.1
At2g29650.2 68415.m03604 inorganic phosphate transporter, putati... 27 9.1
At2g29650.1 68415.m03603 inorganic phosphate transporter, putati... 27 9.1
At1g68190.1 68414.m07790 zinc finger (B-box type) family protein 27 9.1
At1g21580.1 68414.m02698 hydroxyproline-rich glycoprotein family... 27 9.1
>At3g11250.1 68416.m01368 60S acidic ribosomal protein P0 (RPP0C)
similar to 60S acidic ribosomal protein P0 GI:2088654
[Arabidopsis thaliana]
Length = 323
Score = 70.9 bits (166), Expect = 4e-13
Identities = 35/77 (45%), Positives = 52/77 (67%), Gaps = 2/77 (2%)
Frame = +3
Query: 237 GKKHNDRKAIKDHLDN--NPALEKLLPHIKGNVGFVFTRGDLVEVRDKLLENKVQAPARP 410
GK +++++ H +N N A+ LLP ++GNVG +FT+GDL EV +++ + KV APAR
Sbjct: 56 GKNTMMKRSVRIHSENSGNTAILNLLPLLQGNVGLIFTKGDLKEVSEEVAKYKVGAPARV 115
Query: 411 GAIAPLXVVXPAHNTGL 461
G +AP+ VV NTGL
Sbjct: 116 GLVAPIDVVVQPGNTGL 132
Score = 70.1 bits (164), Expect = 7e-13
Identities = 34/63 (53%), Positives = 43/63 (68%)
Frame = +1
Query: 73 MGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGSSIVLMGKNTM 252
M + KA K Y K+ QL+DEY + +V ADNVGS Q+Q IR LRG S+VLMGKNTM
Sbjct: 1 MVKATKAEKKIAYDTKLCQLIDEYTQILVVAADNVGSTQLQNIRKGLRGDSVVLMGKNTM 60
Query: 253 IAK 261
+ +
Sbjct: 61 MKR 63
>At3g09200.1 68416.m01094 60S acidic ribosomal protein P0 (RPP0B)
similar to putative 60S acidic ribosomal protein P0
GB:P50346 [Glycine max]
Length = 320
Score = 70.9 bits (166), Expect = 4e-13
Identities = 35/77 (45%), Positives = 52/77 (67%), Gaps = 2/77 (2%)
Frame = +3
Query: 237 GKKHNDRKAIKDHLDN--NPALEKLLPHIKGNVGFVFTRGDLVEVRDKLLENKVQAPARP 410
GK +++++ H +N N A+ LLP ++GNVG +FT+GDL EV +++ + KV APAR
Sbjct: 56 GKNTMMKRSVRIHSENTGNTAILNLLPLLQGNVGLIFTKGDLKEVSEEVAKYKVGAPARV 115
Query: 411 GAIAPLXVVXPAHNTGL 461
G +AP+ VV NTGL
Sbjct: 116 GLVAPIDVVVQPGNTGL 132
Score = 70.1 bits (164), Expect = 7e-13
Identities = 34/63 (53%), Positives = 43/63 (68%)
Frame = +1
Query: 73 MGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGSSIVLMGKNTM 252
M + KA K Y K+ QL+DEY + +V ADNVGS Q+Q IR LRG S+VLMGKNTM
Sbjct: 1 MVKATKAEKKIAYDTKLCQLIDEYTQILVVAADNVGSTQLQNIRKGLRGDSVVLMGKNTM 60
Query: 253 IAK 261
+ +
Sbjct: 61 MKR 63
>At2g40010.1 68415.m04916 60S acidic ribosomal protein P0 (RPP0A)
Length = 317
Score = 69.7 bits (163), Expect = 1e-12
Identities = 35/77 (45%), Positives = 50/77 (64%), Gaps = 2/77 (2%)
Frame = +3
Query: 237 GKKHNDRKAIKDHLDN--NPALEKLLPHIKGNVGFVFTRGDLVEVRDKLLENKVQAPARP 410
GK +++++ H D N A LLP ++GNVG +FT+GDL EV +++ + KV APAR
Sbjct: 57 GKNTMMKRSVRIHADKTGNQAFLSLLPLLQGNVGLIFTKGDLKEVSEEVAKYKVGAPARV 116
Query: 411 GAIAPLXVVXPAHNTGL 461
G +AP+ VV NTGL
Sbjct: 117 GLVAPIDVVVQPGNTGL 133
Score = 66.9 bits (156), Expect = 7e-12
Identities = 33/58 (56%), Positives = 41/58 (70%)
Frame = +1
Query: 88 KATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGSSIVLMGKNTMIAK 261
KA K Y K+ QLL+EY + +V ADNVGS Q+Q IR LRG S+VLMGKNTM+ +
Sbjct: 7 KAEKKIVYDSKLCQLLNEYSQILVVAADNVGSTQLQNIRKGLRGDSVVLMGKNTMMKR 64
>At4g33330.1 68417.m04740 glycogenin glucosyltransferase
(glycogenin)-related similar to glycogenin
glucosyltransferase (glycogenin-1) (EC 2.4.1.186) from
Homo sapiens [SP|P46976], Mus musculus [SP|Q9R062],
Oryctolagus cuniculus [GI:165513]; contains Pfam profile
PF01501: Glycosyl transferase family 8
Length = 593
Score = 29.5 bits (63), Expect = 1.3
Identities = 17/70 (24%), Positives = 33/70 (47%), Gaps = 4/70 (5%)
Frame = +1
Query: 106 NYFVKIIQLLDEYPKCFIVGADNVGSQQMQQI----RISLRGSSIVLMGKNTMIAKPSKT 273
NY + L +Y K + AD + + + + ++S G+ + + M+ +PS
Sbjct: 373 NYSKFRLWQLTDYDKVIFIDADIIVLRNLDLLFHFPQMSATGNDVWIYNSGIMVIEPSNC 432
Query: 274 TWTTIQPSRN 303
T+TTI R+
Sbjct: 433 TFTTIMSQRS 442
>At4g31770.1 68417.m04508 calcineurin-like phosphoesterase family
protein contains Pfam profile: PF00149 calcineurin-like
phosphoesterase
Length = 418
Score = 29.5 bits (63), Expect = 1.3
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = -2
Query: 344 GEHEANVALDVWQQFLEGWIVVQVVFDGFAIIVFF 240
G HEA+ L W+ + GW + F GFA +V F
Sbjct: 83 GNHEASNYL--WELYYGGWAATNIYFLGFAGVVKF 115
>At1g51860.1 68414.m05846 leucine-rich repeat protein kinase,
putative similar to light repressible receptor protein
kinase [Arabidopsis thaliana] gi|1321686|emb|CAA66376;
contains leucine rich repeat (LRR) domains,
Pfam:PF00560; contains protein kinase domain,
Pfam:PF00069
Length = 890
Score = 29.5 bits (63), Expect = 1.3
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Frame = +3
Query: 282 NNPALEKLL--PHIKGNVGFVFTRGDLVEVRDKLL 380
N P ++K PHI VGF+ T+GD+ + D L
Sbjct: 781 NQPVIDKTRERPHINDWVGFMLTKGDIKSIVDPKL 815
>At1g60250.1 68414.m06785 zinc finger (B-box type) family protein
contains similarity to zinc finger protein GI:3618320
from [Oryza sativa]
Length = 251
Score = 29.1 bits (62), Expect = 1.7
Identities = 19/50 (38%), Positives = 23/50 (46%), Gaps = 3/50 (6%)
Frame = -1
Query: 372 CHGPQRGLRG*TRSQRCP*CVATVSRGLDCCPGGL*WLCDHC---VFSHE 232
CHG R + RC CVA+ S + CP LCD C + SHE
Sbjct: 132 CHGDNNCERW-MFAMRCELCVASNSNAVVYCPTHNQILCDSCDRMIHSHE 180
>At3g50610.1 68416.m05534 hypothetical protein
Length = 229
Score = 28.7 bits (61), Expect = 2.2
Identities = 22/84 (26%), Positives = 35/84 (41%), Gaps = 6/84 (7%)
Frame = +3
Query: 240 KKHNDRKAIK-----DHLDNNPALEKLLPHIKGNVGFVFTRGDLVEVRD-KLLENKVQAP 401
+K ND+ K D + +P + H KGNV + D KLL+ VQ
Sbjct: 16 RKTNDQDHFKAGFTDDFVPTSPGNSPGVGHKKGNVNVEGFQDDFKPTEGRKLLKTNVQDH 75
Query: 402 ARPGAIAPLXVVXPAHNTGLGSRE 473
+ G+ P H+ G+G ++
Sbjct: 76 FKTGSTDDFAPTSPGHSPGVGHKK 99
>At5g13260.1 68418.m01523 expressed protein
Length = 537
Score = 28.3 bits (60), Expect = 3.0
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = -3
Query: 232 ARYWSHVARYGSAASVASPRYRH 164
ARYW +RYG + +A+ +Y +
Sbjct: 330 ARYWGLASRYGICSDIATSKYEY 352
>At3g56700.1 68416.m06307 male sterility protein, putative similar
to SP|Q08891 Male sterility protein 2 {Arabidopsis
thaliana}; contains Pfam profile PF03015: Male sterility
protein
Length = 527
Score = 27.9 bits (59), Expect = 3.9
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +1
Query: 292 PSRNCCHTSRATLASCSPAETSLRSVTNCWRTKSK 396
P R HT+R SC ETS +VT+ K++
Sbjct: 33 PRRRLSHTTRRVQTSCFYGETSFEAVTSLVTPKTE 67
>At2g29000.1 68415.m03527 leucine-rich repeat family protein /
protein kinase family protein contains Pfam domains
PF00560: Leucine Rich Repeat and PF00069: Protein kinase
domain
Length = 872
Score = 27.1 bits (57), Expect = 6.9
Identities = 12/40 (30%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Frame = +3
Query: 276 LDNNPALEKLL--PHIKGNVGFVFTRGDLVEVRDKLLENK 389
+ N P ++++ PHI VG + T+GD+ + D L +
Sbjct: 761 ITNQPVIQQVREKPHIAEWVGLMLTKGDIKSIMDPKLNGE 800
>At1g07200.1 68414.m00766 ATP-dependent Clp protease ClpB
protein-related similar to ATP-dependent Clp protease,
ATP-binding subunit ClpB (GI:24982014) [Pseudomonas
putida KT2440]; similar to ClpB protein
(SP:Q9RA63){Thermus thermophilus}
Length = 422
Score = 27.1 bits (57), Expect = 6.9
Identities = 11/41 (26%), Positives = 19/41 (46%)
Frame = -2
Query: 425 WGNGTRTSWSLDFVLQQFVTDLNEVSAGEHEANVALDVWQQ 303
+G+ T + +LQ + +S+GE E +D W Q
Sbjct: 337 FGSETHLELDKEVILQILAASWSSLSSGEEEGRTIVDQWMQ 377
>At5g59650.1 68418.m07479 leucine-rich repeat protein kinase,
putative contains leucine rich repeat (LRR) domains,
Pfam:PF00560; contains protein kinase domain,
Pfam:PF00069
Length = 892
Score = 26.6 bits (56), Expect = 9.1
Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Frame = +3
Query: 276 LDNNPALE--KLLPHIKGNVGFVFTRGDLVEVRDKLLENKVQA 398
+ N P ++ + HI VGF TRGD+ ++ D L ++
Sbjct: 783 ITNQPVIDQSRSKSHISQWVGFELTRGDITKIMDPNLNGDYES 825
>At4g34040.1 68417.m04830 zinc finger (C3HC4-type RING finger)
family protein similar to Pfam domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 666
Score = 26.6 bits (56), Expect = 9.1
Identities = 17/38 (44%), Positives = 18/38 (47%)
Frame = -3
Query: 433 TXNGAMAPGRAGAWTLFSNSLSRTSTRSPRVNTKPTLP 320
T NGA G A S SLS S SP VN + LP
Sbjct: 205 TENGAWNEGLAQYDASSSLSLSMPSQNSPNVNNQSGLP 242
>At3g02260.1 68416.m00207 auxin transport protein (BIG) nearly
identical to auxin transport protein; BIG [Arabidopsis
thaliana] GI:21779966; contains Pfam profiles PF02207:
Putative zinc finger in N-recognin, PF00569: Zinc finger
ZZ type
Length = 5098
Score = 26.6 bits (56), Expect = 9.1
Identities = 17/46 (36%), Positives = 20/46 (43%)
Frame = +2
Query: 182 RNRCSRSVSRYVAPVSCSWEKTQ*SQSHQRPPGQQSSPRETVATHQ 319
R +RSVS Y++ S S S S PG Q S T T Q
Sbjct: 4877 RTNMARSVSSYISSSSTSTATAPSSDSRPLTPGSQLSSTGTEETVQ 4922
>At2g29650.2 68415.m03604 inorganic phosphate transporter, putative
similar to brain specific Na+-dependent inorganic
phosphate cotransporter [Rattus norvegicus] GI:507415;
contains Pfam profile PF00083: major facilitator
superfamily protein
Length = 398
Score = 26.6 bits (56), Expect = 9.1
Identities = 10/40 (25%), Positives = 23/40 (57%)
Frame = -2
Query: 371 VTDLNEVSAGEHEANVALDVWQQFLEGWIVVQVVFDGFAI 252
V+ N+V + +++ L W++F + W++V + F F +
Sbjct: 77 VSGNNDV-VSDSPSSIVLPWWEEFPKRWVIVLLCFSAFLL 115
>At2g29650.1 68415.m03603 inorganic phosphate transporter, putative
similar to brain specific Na+-dependent inorganic
phosphate cotransporter [Rattus norvegicus] GI:507415;
contains Pfam profile PF00083: major facilitator
superfamily protein
Length = 512
Score = 26.6 bits (56), Expect = 9.1
Identities = 10/40 (25%), Positives = 23/40 (57%)
Frame = -2
Query: 371 VTDLNEVSAGEHEANVALDVWQQFLEGWIVVQVVFDGFAI 252
V+ N+V + +++ L W++F + W++V + F F +
Sbjct: 77 VSGNNDV-VSDSPSSIVLPWWEEFPKRWVIVLLCFSAFLL 115
>At1g68190.1 68414.m07790 zinc finger (B-box type) family protein
Length = 356
Score = 26.6 bits (56), Expect = 9.1
Identities = 7/16 (43%), Positives = 12/16 (75%)
Frame = -1
Query: 417 WHQDELELGLCSPTVC 370
WHQ+ ++G+C T+C
Sbjct: 225 WHQNIQDIGVCEDTIC 240
>At1g21580.1 68414.m02698 hydroxyproline-rich glycoprotein family
protein contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 1696
Score = 26.6 bits (56), Expect = 9.1
Identities = 17/69 (24%), Positives = 35/69 (50%)
Frame = +1
Query: 166 ADNVGSQQMQQIRISLRGSSIVLMGKNTMIAKPSKTTWTTIQPSRNCCHTSRATLASCSP 345
ADN+ S++ +Q ++ SS+ +G K S +++ + C H+ + LA P
Sbjct: 811 ADNMDSEEGKQTCVNDTSSSLTKVG-----VKGSSNV-LSVERTGGCSHSDESDLAMAVP 864
Query: 346 AETSLRSVT 372
+E + +V+
Sbjct: 865 SEGCMENVS 873
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,335,049
Number of Sequences: 28952
Number of extensions: 232307
Number of successful extensions: 730
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 694
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 730
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 858708096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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