Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060787.seq
         (655 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22E12.10c |etp1|cox15|mitochondrial type I [2Fe-2S] ferredox...    30   0.34 
SPAC959.03c |||U3 snoRNP-associated protein Utp7|Schizosaccharom...    27   3.1  
SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr 1||...    25   7.2  

>SPAC22E12.10c |etp1|cox15|mitochondrial type I [2Fe-2S] ferredoxin
           Etp1/ cytochrome oxidase cofactor Cox15,
           fusion|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 631

 Score = 29.9 bits (64), Expect = 0.34
 Identities = 11/46 (23%), Positives = 23/46 (50%)
 Frame = -1

Query: 442 IPITSASFHTAGKMQCVIAAFRMVANIVXSWTGKSFNAWLRMPSEP 305
           +P+  A+ H AG +  + AA  +   +   +  K+  +W ++ S P
Sbjct: 438 VPVPLAALHQAGSLVTLTAALSLAQRLHPEYALKNIRSWTKLISSP 483


>SPAC959.03c |||U3 snoRNP-associated protein
           Utp7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 520

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 14/57 (24%), Positives = 27/57 (47%)
 Frame = +1

Query: 367 WLPS*MPL*RTASFRRYGKKRTLSVYTSRANRIMKPLVTVRLVSSQRWQNLRTAPSE 537
           W+P      + ++ RRY +K   +V   R  ++ K L   + + +QR +  +  P E
Sbjct: 449 WVPKAKARGKNSALRRYLRKHARNVVDQRRLKVEKSLEIEKKMRAQRVRREQKLPEE 505


>SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 992

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = +1

Query: 175 PEHTEAVDGEVERRASLLPSDALPPI 252
           P+H  ++D  + R  S+  S+ALP +
Sbjct: 632 PKHLPSLDETISREMSIASSEALPQV 657


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,533,409
Number of Sequences: 5004
Number of extensions: 47870
Number of successful extensions: 114
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)