Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060787.seq
(655 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_04_0144 + 14044973-14044984,14045050-14045183,14045329-140458... 34 0.086
02_02_0078 + 6587491-6588021,6588160-6589151,6592430-6592607,659... 34 0.086
05_06_0137 + 25936516-25936606,25936716-25937268,25937436-259379... 29 2.4
06_03_0606 - 22689935-22689998,22690716-22691159,22691669-226920... 28 5.6
07_03_1090 + 23891294-23892222,23892317-23892516,23895241-238954... 28 7.5
05_04_0401 - 20982923-20983106,20983129-20983186,20983322-209835... 28 7.5
02_03_0405 - 18653139-18653276,18653827-18653995,18654244-18654551 28 7.5
05_05_0208 + 23275931-23275996,23276084-23276196,23276279-232764... 27 9.9
04_03_0573 + 17329365-17330440,17330505-17331201 27 9.9
>11_04_0144 +
14044973-14044984,14045050-14045183,14045329-14045824,
14046097-14046117,14047504-14047767,14048635-14048715
Length = 335
Score = 34.3 bits (75), Expect = 0.086
Identities = 31/87 (35%), Positives = 43/87 (49%), Gaps = 4/87 (4%)
Frame = +3
Query: 252 YSDEVREVIDNLQPKKAPGSDGIRNHAL-KLLPV--QLITMLATILNAAMTHCIFPAVWK 422
Y+ EV +I +QP KAP DGI + L K P+ Q LA +A T + P
Sbjct: 223 YTQEVDNLIKVIQPDKAPSPDGINGYFLKKCWPIISQEFYWLAAHFHACYTD-LQPINKS 281
Query: 423 EADVIGIHKPGKPNNETAS-YRPISLL 500
++ P K + ET + YRPISL+
Sbjct: 282 FITLV----PKKSSPETVNDYRPISLM 304
>02_02_0078 +
6587491-6588021,6588160-6589151,6592430-6592607,
6592635-6592794,6592992-6593158,6593246-6593869
Length = 883
Score = 34.3 bits (75), Expect = 0.086
Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 4/55 (7%)
Frame = +3
Query: 246 PHYSDEVREVIDNLQPKKAPGSDG--IRN--HALKLLPVQLITMLATILNAAMTH 398
P+ DE+++ + + P KAPG DG + N H K P+ L +L I + + +
Sbjct: 152 PYSDDEIKDALFQMGPTKAPGPDGRKVHNPEHLSKFRPISLCNVLYKIASKVLAN 206
>05_06_0137 +
25936516-25936606,25936716-25937268,25937436-25937932,
25938030-25938090,25938411-25938482,25938563-25938634,
25938730-25938810,25938918-25939081,25939174-25939442,
25939531-25939657,25939778-25939846,25939944-25940136,
25940232-25940733
Length = 916
Score = 29.5 bits (63), Expect = 2.4
Identities = 22/82 (26%), Positives = 37/82 (45%)
Frame = +3
Query: 327 HALKLLPVQLITMLATILNAAMTHCIFPAVWKEADVIGIHKPGKPNNETASYRPISLLPA 506
H KL + ++ ++ ++T +F + ++ ++ KP NETASY P
Sbjct: 495 HKSKLAIYVAVPVVLVLVIVSVTILLFCLLGRKKKQGSMNTSVKPQNETASYVP------ 548
Query: 507 MAKFTNGSFGNASGTSLPRIKF 572
TNGS G+ S L +F
Sbjct: 549 ----TNGSHGHGSSMQLENRRF 566
>06_03_0606 -
22689935-22689998,22690716-22691159,22691669-22692057,
22692130-22692223,22692507-22692599,22692705-22692913,
22692999-22693833,22693948-22694038,22698069-22698892,
22699384-22700489,22701353-22701415
Length = 1403
Score = 28.3 bits (60), Expect = 5.6
Identities = 17/48 (35%), Positives = 24/48 (50%)
Frame = +3
Query: 414 VWKEADVIGIHKPGKPNNETASYRPISLLPAMAKFTNGSFGNASGTSL 557
+W + I H+P + N A+ RPI L A F G +G A T+L
Sbjct: 367 LWLQEYAIVHHRPYRVVNSAANRRPI--LAIDATFLTGKYGGALMTAL 412
>07_03_1090 +
23891294-23892222,23892317-23892516,23895241-23895482,
23895771-23896461,23896486-23896562
Length = 712
Score = 27.9 bits (59), Expect = 7.5
Identities = 16/65 (24%), Positives = 25/65 (38%)
Frame = +1
Query: 58 MPPLVRPSGQPPAFXXXXXXXXXXXXXQEQCTTSTQYADPEHTEAVDGEVERRASLLPSD 237
+PPL RP QPP ++ +T Y P+ + + S L
Sbjct: 144 LPPLKRPESQPPPPPPSTPPLTTTGYSTDEEDQATYYTAPKTAMSSFSRSTSQHSTLEQT 203
Query: 238 ALPPI 252
A+PP+
Sbjct: 204 AMPPM 208
>05_04_0401 -
20982923-20983106,20983129-20983186,20983322-20983503,
20983637-20983752,20984148-20984234,20984334-20984477,
20984556-20984672,20984790-20984936,20985717-20985938,
20986919-20987072,20987583-20987632,20987870-20987921,
20987985-20988211
Length = 579
Score = 27.9 bits (59), Expect = 7.5
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = -3
Query: 218 ALRSTSPSTASVCSGSAYWV 159
ALRS+SP +AS CS +W+
Sbjct: 204 ALRSSSPWSASACSHGFFWM 223
>02_03_0405 - 18653139-18653276,18653827-18653995,18654244-18654551
Length = 204
Score = 27.9 bits (59), Expect = 7.5
Identities = 11/32 (34%), Positives = 16/32 (50%)
Frame = +3
Query: 129 RCTARAVHHQHPIRGPRTHRGSRRGGRAQSFP 224
RC H + + P THR +RGG ++ P
Sbjct: 50 RCLEACQGHPYLVEHPTTHREMKRGGDGRACP 81
>05_05_0208 +
23275931-23275996,23276084-23276196,23276279-23276459,
23276590-23276674,23276974-23277104,23277194-23277432,
23277512-23277748,23277838-23277992,23278039-23278271,
23278359-23278521,23278613-23278818,23278960-23279019,
23279106-23279198,23279406-23279569,23280070-23280138,
23280241-23280382,23280490-23280546
Length = 797
Score = 27.5 bits (58), Expect = 9.9
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +3
Query: 252 YSDEVREVIDNLQPKKAPGSDGIRNHALKL 341
Y VR+++ N + + G D +RNH+L L
Sbjct: 28 YMQAVRDMVQNKRHRLIIGMDDLRNHSLDL 57
>04_03_0573 + 17329365-17330440,17330505-17331201
Length = 590
Score = 27.5 bits (58), Expect = 9.9
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = +3
Query: 411 AVWKEADVIGIHKPGKPNNETASYRPISLLPAMA 512
AV++E D + + PG ++ ++RP LP +A
Sbjct: 281 AVYREDDRVDVATPGDGRSDYPAFRPTPTLPLVA 314
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,194,715
Number of Sequences: 37544
Number of extensions: 379117
Number of successful extensions: 1289
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1255
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1289
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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