Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060787.seq
         (655 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF100669-1|AAK39265.1|  931|Caenorhabditis elegans Hypothetical ...    61   6e-10
AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse trans...    45   5e-05
AF025462-7|AAB71003.1|  805|Caenorhabditis elegans Hypothetical ...    45   5e-05
U58735-1|AAC48148.1|  891|Caenorhabditis elegans Hypothetical pr...    41   9e-04
U67947-1|AAB07557.2| 1147|Caenorhabditis elegans Hypothetical pr...    31   0.54 
Z83111-6|CAB05529.2|  316|Caenorhabditis elegans Hypothetical pr...    31   0.71 
U40952-1|AAK68681.3|  436|Caenorhabditis elegans Hypothetical pr...    31   0.94 
U51998-7|AAA96080.2|  769|Caenorhabditis elegans Hypothetical pr...    29   2.2  
U51998-6|ABS83845.1|  825|Caenorhabditis elegans Hypothetical pr...    29   2.2  
AF016663-5|AAC70880.1|  864|Caenorhabditis elegans Hypothetical ...    29   3.8  

>AF100669-1|AAK39265.1|  931|Caenorhabditis elegans Hypothetical
           protein R11E3.3 protein.
          Length = 931

 Score = 61.3 bits (142), Expect = 6e-10
 Identities = 39/107 (36%), Positives = 55/107 (51%)
 Frame = +3

Query: 195 RRGGRAQSFPATLGRVTPHYSDEVREVIDNLQPKKAPGSDGIRNHALKLLPVQLITMLAT 374
           RR  R         R+T   S E+  +   + P  A G DGI    ++ LP+   + LA 
Sbjct: 313 RRNKRISKIAPLQDRIT---SIELHNMAIKMSPSAAIGPDGIAQIHIRKLPMCGYSFLAY 369

Query: 375 ILNAAMTHCIFPAVWKEADVIGIHKPGKPNNETASYRPISLLPAMAK 515
           + N +++  I P  WK+A+VI I KP K     +SYRPISLL  +AK
Sbjct: 370 LYNVSLSTNIIPDKWKKANVIMIPKPKKDPAIASSYRPISLLSPIAK 416


>AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse
           transcriptase protein.
          Length = 1066

 Score = 44.8 bits (101), Expect = 5e-05
 Identities = 32/103 (31%), Positives = 44/103 (42%)
 Frame = +3

Query: 207 RAQSFPATLGRVTPHYSDEVREVIDNLQPKKAPGSDGIRNHALKLLPVQLITMLATILNA 386
           +  S PAT     P   +E+R V+ +    KA G D I    LK     +I ++    N 
Sbjct: 534 QTSSIPAT-ATPPPFLPEEIRHVLRSFPNGKAAGQDKISADFLKSCHDNVIDLITDRFNR 592

Query: 387 AMTHCIFPAVWKEADVIGIHKPGKPNNETASYRPISLLPAMAK 515
            +     P  WK +    I K G   N   +YRPI LLP + K
Sbjct: 593 YLHSRNVPKPWKTSKTTLIFKKGDREN-LENYRPICLLPVLYK 634


>AF025462-7|AAB71003.1|  805|Caenorhabditis elegans Hypothetical
           protein K10F12.5 protein.
          Length = 805

 Score = 44.8 bits (101), Expect = 5e-05
 Identities = 32/103 (31%), Positives = 44/103 (42%)
 Frame = +3

Query: 207 RAQSFPATLGRVTPHYSDEVREVIDNLQPKKAPGSDGIRNHALKLLPVQLITMLATILNA 386
           +  S PAT     P   +E+R V+ +    KA G D I    LK     +I ++    N 
Sbjct: 273 QTSSIPAT-ATPPPFLPEEIRHVLRSFPNGKAAGQDKISADFLKSCHDNVIDLITDRFNR 331

Query: 387 AMTHCIFPAVWKEADVIGIHKPGKPNNETASYRPISLLPAMAK 515
            +     P  WK +    I K G   N   +YRPI LLP + K
Sbjct: 332 YLHSRNVPKPWKTSKTTLIFKKGDREN-LENYRPICLLPVLYK 373


>U58735-1|AAC48148.1|  891|Caenorhabditis elegans Hypothetical
           protein F20B4.7 protein.
          Length = 891

 Score = 40.7 bits (91), Expect = 9e-04
 Identities = 30/103 (29%), Positives = 43/103 (41%)
 Frame = +3

Query: 207 RAQSFPATLGRVTPHYSDEVREVIDNLQPKKAPGSDGIRNHALKLLPVQLITMLATILNA 386
           +A S P T     P   +++R  + +    KA G D I    LK     +I ++    N 
Sbjct: 363 QASSIPTT-ATPPPFLPEKIRYALRSFPNGKAAGQDKISADFLKSCHDNVIDLITDRFNR 421

Query: 387 AMTHCIFPAVWKEADVIGIHKPGKPNNETASYRPISLLPAMAK 515
            +     P  WK +    I K G   N   +YRPI LLP + K
Sbjct: 422 YLHSRNVPKPWKTSKTTLIFKKGDREN-LENYRPICLLPVLYK 463


>U67947-1|AAB07557.2| 1147|Caenorhabditis elegans Hypothetical protein
            H03E18.1 protein.
          Length = 1147

 Score = 31.5 bits (68), Expect = 0.54
 Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
 Frame = +2

Query: 320  PQPRVKTLTSPTXNNVGYHP--KCRYDALHLSGGMER 424
            P PR+ T T P+    GY P  +C Y AL+ +  + R
Sbjct: 1040 PLPRITTTTEPSTTTAGYPPAGRCSYSALYQTSFLGR 1076


>Z83111-6|CAB05529.2|  316|Caenorhabditis elegans Hypothetical
           protein F57G8.8 protein.
          Length = 316

 Score = 31.1 bits (67), Expect = 0.71
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -1

Query: 160 CWWCTALAVHRPATLPCHRH 101
           C W  ++A+H PA L CH H
Sbjct: 119 CHWLISIALHMPAVLICHAH 138


>U40952-1|AAK68681.3|  436|Caenorhabditis elegans Hypothetical
           protein C03B1.13 protein.
          Length = 436

 Score = 30.7 bits (66), Expect = 0.94
 Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 4/40 (10%)
 Frame = +2

Query: 332 VKTLTSPTXNNVG-YHPKCRYDALH---LSGGMERSGRYR 439
           V  +T PT N +  +HP+C ++A+H      G ERS  YR
Sbjct: 140 VLIITPPTPNYLSHFHPECIHEAIHSKLFYHGTERSNSYR 179


>U51998-7|AAA96080.2|  769|Caenorhabditis elegans Hypothetical
           protein C12D12.1a protein.
          Length = 769

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +1

Query: 31  TLKSETTATMPPLVRPSGQPP 93
           T+ S TT T PP+  P+ QPP
Sbjct: 545 TVPSSTTQTAPPVTTPTSQPP 565


>U51998-6|ABS83845.1|  825|Caenorhabditis elegans Hypothetical
           protein C12D12.1c protein.
          Length = 825

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +1

Query: 31  TLKSETTATMPPLVRPSGQPP 93
           T+ S TT T PP+  P+ QPP
Sbjct: 601 TVPSSTTQTAPPVTTPTSQPP 621


>AF016663-5|AAC70880.1|  864|Caenorhabditis elegans Hypothetical
           protein F21E9.5 protein.
          Length = 864

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 20/70 (28%), Positives = 28/70 (40%)
 Frame = +3

Query: 246 PHYSDEVREVIDNLQPKKAPGSDGIRNHALKLLPVQLITMLATILNAAMTHCIFPAVWKE 425
           P    E+R  I++    KA GSD I    LK     +I ++    N  +     P  WK 
Sbjct: 395 PFLFGEIRAAINSFPNGKAAGSDKITADFLKSCGDYVIRLITGRFNRYLESGNIPKDWKT 454

Query: 426 ADVIGIHKPG 455
           +    I K G
Sbjct: 455 SKTTLIFKKG 464


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,385,918
Number of Sequences: 27780
Number of extensions: 282249
Number of successful extensions: 765
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 728
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 762
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1455289764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)