Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060787.seq
         (655 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g54710.1 68418.m06813 ankyrin repeat family protein contains ...    32   0.38 
At5g45290.1 68418.m05560 zinc finger (C3HC4-type RING finger) fa...    29   2.7  
At5g16220.1 68418.m01895 octicosapeptide/Phox/Bem1p (PB1) domain...    28   4.7  

>At5g54710.1 68418.m06813 ankyrin repeat family protein contains
           ankyrin repeat domains, Pfam:PF00023
          Length = 598

 Score = 31.9 bits (69), Expect = 0.38
 Identities = 24/82 (29%), Positives = 41/82 (50%), Gaps = 6/82 (7%)
 Frame = -1

Query: 526 PFVNFAIAGRRLIGR*LAVS----LF-GLPGLCIPITSASFHTAGKMQCVIAAFRMVANI 362
           PF+  A AGR L  +  +V+    LF  L  + + ++  S+ T     CV+ A +M+   
Sbjct: 454 PFIGKATAGRTLAFKIFSVANNIALFTSLSIVTLLVSIISYRTKALKMCVVIAHKMMWLA 513

Query: 361 VXSW-TGKSFNAWLRMPSEPGA 299
           V S  T  + +AW+ +P   G+
Sbjct: 514 VASMATAYAASAWITVPHNEGS 535


>At5g45290.1 68418.m05560 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 545

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 28/85 (32%), Positives = 37/85 (43%), Gaps = 5/85 (5%)
 Frame = +3

Query: 123 AGRCTARAVHHQHPIRGPRTHRGSRRGGRAQ-SFPATLGRVTPHYSDEVRE---VIDNLQ 290
           AGRCT RAV +    RG  T        RA  S    L        DE+ +   V+ + Q
Sbjct: 400 AGRCTCRAVTN----RGSTTATTDETNARASISRIVLLAEALFEVLDEIHQQSVVLSSQQ 455

Query: 291 PK-KAPGSDGIRNHALKLLPVQLIT 362
           P   + GS    N  + LLP++L T
Sbjct: 456 PSVSSIGSVPAPNDVVDLLPIKLYT 480


>At5g16220.1 68418.m01895 octicosapeptide/Phox/Bem1p (PB1)
           domain-containing protein hypothetical proteins -
           Arabidopsis thaliana contains Pfam profile PF00564: PB1
           domain
          Length = 476

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +3

Query: 282 NLQPKKAPGSDGIRNHALKLLPVQLIT 362
           NL P K+ G D I N  +K  P++ +T
Sbjct: 246 NLPPIKSSGEDNIANSQVKFAPIESVT 272


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,719,972
Number of Sequences: 28952
Number of extensions: 270759
Number of successful extensions: 702
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 686
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 702
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1363910256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)