Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060786.seq
(639 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1085 - 23851852-23853165 90 2e-18
03_05_0830 + 28034179-28035492 89 3e-18
01_07_0127 + 41234826-41236136 86 2e-17
01_01_0453 - 3361460-3361549,3361660-3361846,3362038-3362139,336... 30 1.3
01_01_0953 - 7472173-7472178,7472216-7472311,7472370-7472462,747... 30 1.8
08_02_1335 - 26226784-26227015,26227493-26228474,26229021-26230686 29 2.4
10_01_0353 + 3882691-3882937,3883216-3883320,3883780-3883907 29 4.1
10_03_0033 - 7248131-7248711,7248947-7249079,7249470-7249994,725... 28 5.4
12_02_0966 - 24906361-24906958,24907084-24907250,24907403-249076... 28 7.2
01_01_0132 - 1197988-1198206,1198255-1198356,1198518-1198821,119... 27 9.5
>07_03_1085 - 23851852-23853165
Length = 437
Score = 89.8 bits (213), Expect = 2e-18
Identities = 40/54 (74%), Positives = 48/54 (88%)
Frame = +3
Query: 348 MSEESSADRNVEIWKIKKLIKSLEMARGNGTSMISLIIPPKDQISRVSKMLADD 509
MS+ DRN+EIWKIKKLIK+LE ARGNGTSMISLI+PP+DQI+RV+KML D+
Sbjct: 1 MSDSHETDRNIEIWKIKKLIKALESARGNGTSMISLIMPPRDQIARVAKMLGDE 54
Score = 66.1 bits (154), Expect = 2e-11
Identities = 33/43 (76%), Positives = 35/43 (81%)
Frame = +2
Query: 491 KDVG**FGTASNIKSRVNRLSVLGAITSVQHRLKLYTKVPPNG 619
K +G +GTASNIKSRVNR SVL AITS Q RLKLY KVPPNG
Sbjct: 49 KMLGDEYGTASNIKSRVNRQSVLAAITSAQQRLKLYNKVPPNG 91
>03_05_0830 + 28034179-28035492
Length = 437
Score = 89.0 bits (211), Expect = 3e-18
Identities = 39/54 (72%), Positives = 48/54 (88%)
Frame = +3
Query: 348 MSEESSADRNVEIWKIKKLIKSLEMARGNGTSMISLIIPPKDQISRVSKMLADD 509
MS+ D+N+EIWKIKKLIK+LE ARGNGTSMISLI+PP+DQ+SRV+KML D+
Sbjct: 1 MSDGQETDKNIEIWKIKKLIKALESARGNGTSMISLIMPPRDQVSRVTKMLGDE 54
Score = 66.1 bits (154), Expect = 2e-11
Identities = 33/43 (76%), Positives = 35/43 (81%)
Frame = +2
Query: 491 KDVG**FGTASNIKSRVNRLSVLGAITSVQHRLKLYTKVPPNG 619
K +G +GTASNIKSRVNR SVL AITS Q RLKLY KVPPNG
Sbjct: 49 KMLGDEYGTASNIKSRVNRQSVLAAITSAQQRLKLYNKVPPNG 91
>01_07_0127 + 41234826-41236136
Length = 436
Score = 86.2 bits (204), Expect = 2e-17
Identities = 36/54 (66%), Positives = 47/54 (87%)
Frame = +3
Query: 348 MSEESSADRNVEIWKIKKLIKSLEMARGNGTSMISLIIPPKDQISRVSKMLADD 509
M++ D+N+EIWK+KKLIK L+ ARGNGTSMISLI+PP+DQ+SRV+KML D+
Sbjct: 1 MADSHETDKNIEIWKVKKLIKGLDAARGNGTSMISLIMPPRDQVSRVTKMLGDE 54
Score = 64.9 bits (151), Expect = 5e-11
Identities = 32/43 (74%), Positives = 35/43 (81%)
Frame = +2
Query: 491 KDVG**FGTASNIKSRVNRLSVLGAITSVQHRLKLYTKVPPNG 619
K +G +GTASNIKSRVNR SVL AITS Q RLKLY +VPPNG
Sbjct: 49 KMLGDEYGTASNIKSRVNRQSVLAAITSAQQRLKLYNRVPPNG 91
>01_01_0453 -
3361460-3361549,3361660-3361846,3362038-3362139,
3362239-3362306,3362976-3363175,3363253-3363595,
3363837-3363893,3364011-3364727,3364805-3365007,
3365171-3365297
Length = 697
Score = 30.3 bits (65), Expect = 1.3
Identities = 15/41 (36%), Positives = 25/41 (60%)
Frame = +3
Query: 297 YTNIVFVVN*LNKKRNKMSEESSADRNVEIWKIKKLIKSLE 419
Y + ++N L+KK +M E+ D + EI +KKL+K +E
Sbjct: 347 YAELYQIINDLSKKTEEM-EKMKVDSDQEILLLKKLVKVME 386
>01_01_0953 - 7472173-7472178,7472216-7472311,7472370-7472462,
7472855-7473019,7473689-7474821,7474902-7475426,
7477077-7477249,7478737-7478831,7478893-7481688
Length = 1693
Score = 29.9 bits (64), Expect = 1.8
Identities = 16/47 (34%), Positives = 28/47 (59%)
Frame = +3
Query: 381 EIWKIKKLIKSLEMARGNGTSMISLIIPPKDQISRVSKMLADDLVQL 521
E+ +++KL+ S+E+ GNG M++ +D +S V+ L D V L
Sbjct: 1125 EVKELEKLVDSIEVDIGNGGKMMA---SDEDPVSEVNSKLRDAAVSL 1168
>08_02_1335 - 26226784-26227015,26227493-26228474,26229021-26230686
Length = 959
Score = 29.5 bits (63), Expect = 2.4
Identities = 9/26 (34%), Positives = 17/26 (65%)
Frame = +1
Query: 463 HLRIKSREYQRCWLMIWYSFQYQVTC 540
H R+ +R+++ W+ +WYS Y+ C
Sbjct: 275 HARLHARKFEHHWVGLWYSDPYKGYC 300
>10_01_0353 + 3882691-3882937,3883216-3883320,3883780-3883907
Length = 159
Score = 28.7 bits (61), Expect = 4.1
Identities = 15/47 (31%), Positives = 28/47 (59%)
Frame = +3
Query: 369 DRNVEIWKIKKLIKSLEMARGNGTSMISLIIPPKDQISRVSKMLADD 509
+R++E+W+I K ++ A+ TS ISL+ +++RVS D+
Sbjct: 93 ERDLEVWRISKEVQVNMEAQTKSTSRISLL----GEVNRVSTRTVDN 135
>10_03_0033 -
7248131-7248711,7248947-7249079,7249470-7249994,
7250545-7250764,7250913-7251145
Length = 563
Score = 28.3 bits (60), Expect = 5.4
Identities = 21/58 (36%), Positives = 27/58 (46%)
Frame = +3
Query: 114 KKSPSNRRRKCKLESVIGVARCLVRPVQTRLGQFETGIRAPFP*YSFFKVLVLCKDII 287
KK NRRR C L +IG + VR Q R + + + F +L L KDII
Sbjct: 354 KKREMNRRRACMLADMIGAPQS-VRQAQDRFVRSLRTVHSKFK-AVLTALLKLAKDII 409
>12_02_0966 -
24906361-24906958,24907084-24907250,24907403-24907650,
24907824-24908001,24908196-24908372,24908459-24908563,
24908633-24908770,24909757-24910836
Length = 896
Score = 27.9 bits (59), Expect = 7.2
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = +3
Query: 273 CKDIILVIYTNIVFVVN*LNKKRNKMSEESSADR 374
C+D+ L+I +NI + L + R + EE+ ADR
Sbjct: 515 CEDLRLIIQSNIYNYLGILLEGRERFEEEAIADR 548
>01_01_0132 -
1197988-1198206,1198255-1198356,1198518-1198821,
1199221-1199292,1199384-1199420,1199527-1199585,
1199844-1200128,1200293-1200465,1201020-1201213,
1202245-1202374
Length = 524
Score = 27.5 bits (58), Expect = 9.5
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = +1
Query: 529 QVTCESSLSAWRNYFCTAP 585
+VT +++ +AW NY CT P
Sbjct: 410 EVTFDNATTAWLNYTCTVP 428
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,614,102
Number of Sequences: 37544
Number of extensions: 321756
Number of successful extensions: 810
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 794
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 810
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1573040476
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -