Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060786.seq
(639 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF016452-11|AAB66012.1| 443|Caenorhabditis elegans Hypothetical... 93 2e-19
Z81463-2|CAB03851.1| 342|Caenorhabditis elegans Hypothetical pr... 32 0.30
J05274-1|AAA27984.1| 360|Caenorhabditis elegans protein ( C.ele... 32 0.40
AF067211-13|AAC16993.1| 360|Caenorhabditis elegans Protein kina... 32 0.40
AL132848-3|CAB60386.1| 327|Caenorhabditis elegans Hypothetical ... 29 2.1
AC024799-9|AAK72312.1| 293|Caenorhabditis elegans Hypothetical ... 29 2.8
AC006607-6|AAF60370.2| 496|Caenorhabditis elegans Hypothetical ... 29 2.8
Z71186-4|CAA94916.1| 867|Caenorhabditis elegans Hypothetical pr... 28 4.9
AL132949-35|CAI70419.1| 466|Caenorhabditis elegans Hypothetical... 28 4.9
AL132949-34|CAB61101.3| 574|Caenorhabditis elegans Hypothetical... 28 4.9
U80846-1|AAC70888.1| 120|Caenorhabditis elegans Hypothetical pr... 28 6.5
AL021497-8|CAA16409.1| 334|Caenorhabditis elegans Hypothetical ... 28 6.5
AL110500-19|CAB60433.2| 468|Caenorhabditis elegans Hypothetical... 27 8.6
>AF016452-11|AAB66012.1| 443|Caenorhabditis elegans Hypothetical
protein T05H4.6 protein.
Length = 443
Score = 93.1 bits (221), Expect = 2e-19
Identities = 50/95 (52%), Positives = 64/95 (67%), Gaps = 1/95 (1%)
Frame = +3
Query: 357 ESSADRNVEIWKIKKLIKSLEMARGNGTSMISLIIPPKDQISRVSKMLADDL-VQLPISS 533
+ +ADRNVE+WKIK+LIKSLE+ARGNGTSMISLIIPPKDQ++R+ +MLA++ I S
Sbjct: 13 DDAADRNVEMWKIKRLIKSLELARGNGTSMISLIIPPKDQVARIQRMLAEEYGTASNIKS 72
Query: 534 HV*IVSQCLAQLLLYSTDSSCTLKCHQTGLVIYCG 638
V +S L + K GLV+YCG
Sbjct: 73 RVNRLS-VLGAITSVQGRLKLYNKVPPNGLVVYCG 106
>Z81463-2|CAB03851.1| 342|Caenorhabditis elegans Hypothetical
protein C06B8.3 protein.
Length = 342
Score = 32.3 bits (70), Expect = 0.30
Identities = 21/56 (37%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Frame = -2
Query: 278 FAQHQNFKKRILWKGSPNSSFKLP*SSLNRTD-ETPRDSDHTF*FTFTSAVARTFL 114
F + NF+K I+ SPN+S + SL R ET R +TF F A+ R F+
Sbjct: 161 FHYNSNFRKSIIIVNSPNNSSRYFQCSLCRAPLETIRSDSNTFQKYFQGALLRNFI 216
>J05274-1|AAA27984.1| 360|Caenorhabditis elegans protein (
C.elegans casein kinaseII-alpha gene, complete cds. ).
Length = 360
Score = 31.9 bits (69), Expect = 0.40
Identities = 24/79 (30%), Positives = 38/79 (48%)
Frame = +3
Query: 390 KIKKLIKSLEMARGNGTSMISLIIPPKDQISRVSKMLADDLVQLPISSHV*IVSQCLAQL 569
KIK+ IK LE RG GT++I+L+ KD ISR ++ + + +S +
Sbjct: 76 KIKREIKILENLRG-GTNIITLLDVVKDPISRTPALIFEHVNNSDFKQLYQTLSDYDIRY 134
Query: 570 LLYSTDSSCTLKCHQTGLV 626
LY + CH G++
Sbjct: 135 YLYELLKALDF-CHSQGIM 152
>AF067211-13|AAC16993.1| 360|Caenorhabditis elegans Protein kinase
protein 3 protein.
Length = 360
Score = 31.9 bits (69), Expect = 0.40
Identities = 24/79 (30%), Positives = 38/79 (48%)
Frame = +3
Query: 390 KIKKLIKSLEMARGNGTSMISLIIPPKDQISRVSKMLADDLVQLPISSHV*IVSQCLAQL 569
KIK+ IK LE RG GT++I+L+ KD ISR ++ + + +S +
Sbjct: 76 KIKREIKILENLRG-GTNIITLLDVVKDPISRTPALIFEHVNNSDFKQLYQTLSDYDIRY 134
Query: 570 LLYSTDSSCTLKCHQTGLV 626
LY + CH G++
Sbjct: 135 YLYELLKALDF-CHSQGIM 152
>AL132848-3|CAB60386.1| 327|Caenorhabditis elegans Hypothetical
protein Y47H10A.4 protein.
Length = 327
Score = 29.5 bits (63), Expect = 2.1
Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Frame = +3
Query: 132 RRRKCKL--ESVIGVARCLVRPVQTRLGQFETGIRAPFP*YSFFKVLVLCKDII 287
+ + CK +SV G A L+ + +R GQ+ T +P YS +KV L +D I
Sbjct: 196 KEKSCKFYWQSVFGNAPVLI--IGSRSGQYSTQTTNNYPPYSLYKVEELKRDRI 247
>AC024799-9|AAK72312.1| 293|Caenorhabditis elegans Hypothetical
protein Y49C4A.1 protein.
Length = 293
Score = 29.1 bits (62), Expect = 2.8
Identities = 9/26 (34%), Positives = 16/26 (61%)
Frame = -1
Query: 159 HFLVYIYVCGCSDFSSCAGILGFFLI 82
HFL+ CS+ ++C I+ FF++
Sbjct: 79 HFLIVYLALPCSNIAACRSIIAFFIV 104
>AC006607-6|AAF60370.2| 496|Caenorhabditis elegans Hypothetical
protein C09E7.5 protein.
Length = 496
Score = 29.1 bits (62), Expect = 2.8
Identities = 15/43 (34%), Positives = 26/43 (60%)
Frame = +3
Query: 330 NKKRNKMSEESSADRNVEIWKIKKLIKSLEMARGNGTSMISLI 458
NKKR++ S+++ +N EI +KK + SL ++ +M S I
Sbjct: 124 NKKRDEASKKTLNSKNEEIEHLKKRVISLSNSQSENETMKSKI 166
>Z71186-4|CAA94916.1| 867|Caenorhabditis elegans Hypothetical
protein F23D12.5 protein.
Length = 867
Score = 28.3 bits (60), Expect = 4.9
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = +2
Query: 386 MEDKETYKELGNGQRKWNIYDIPDHST*GSNLESIKDVG 502
M DK T + LGN ++ + N ES+KD+G
Sbjct: 476 MNDKNTVQRLGNAWAVFDFEGVTQLRDFAKNYESLKDIG 514
>AL132949-35|CAI70419.1| 466|Caenorhabditis elegans Hypothetical
protein Y53F4B.27b protein.
Length = 466
Score = 28.3 bits (60), Expect = 4.9
Identities = 10/24 (41%), Positives = 19/24 (79%)
Frame = +1
Query: 61 HMLRGNRNKKKSKNPRTRRKVRAT 132
H ++GN KK++K+ +TR+K R++
Sbjct: 84 HEVQGNVTKKRTKHSKTRQKARSS 107
>AL132949-34|CAB61101.3| 574|Caenorhabditis elegans Hypothetical
protein Y53F4B.27a protein.
Length = 574
Score = 28.3 bits (60), Expect = 4.9
Identities = 10/24 (41%), Positives = 19/24 (79%)
Frame = +1
Query: 61 HMLRGNRNKKKSKNPRTRRKVRAT 132
H ++GN KK++K+ +TR+K R++
Sbjct: 192 HEVQGNVTKKRTKHSKTRQKARSS 215
>U80846-1|AAC70888.1| 120|Caenorhabditis elegans Hypothetical
protein K06A9.3 protein.
Length = 120
Score = 27.9 bits (59), Expect = 6.5
Identities = 13/42 (30%), Positives = 20/42 (47%)
Frame = +3
Query: 510 LVQLPISSHV*IVSQCLAQLLLYSTDSSCTLKCHQTGLVIYC 635
+V P+ +HV +V ++ DS C +CH G YC
Sbjct: 1 MVSKPVQTHVLVVVSLRKIMMTRMIDSMCPSECHSRG---YC 39
>AL021497-8|CAA16409.1| 334|Caenorhabditis elegans Hypothetical
protein Y51A2D.12 protein.
Length = 334
Score = 27.9 bits (59), Expect = 6.5
Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 4/37 (10%)
Frame = +1
Query: 13 FVQRHLLFL*CLNFVFHMLRG----NRNKKKSKNPRT 111
F+ L+FL C N VF++L G N KK K P T
Sbjct: 184 FLMPALIFLTCFNIVFNVLAGIRLYNMKKKGVKVPET 220
>AL110500-19|CAB60433.2| 468|Caenorhabditis elegans Hypothetical
protein Y87G2A.13 protein.
Length = 468
Score = 27.5 bits (58), Expect = 8.6
Identities = 18/64 (28%), Positives = 28/64 (43%)
Frame = +3
Query: 111 KKKSPSNRRRKCKLESVIGVARCLVRPVQTRLGQFETGIRAPFP*YSFFKVLVLCKDIIL 290
+K + NRR+K + E+ G + P Q L + F Y+ L LC + L
Sbjct: 56 EKMNQRNRRKKREDEAAEGFSLPKSSPFQLNLYPVDVKDLVQFEMYTSLHWLCLCIPVCL 115
Query: 291 VIYT 302
+YT
Sbjct: 116 FVYT 119
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,826,678
Number of Sequences: 27780
Number of extensions: 300676
Number of successful extensions: 858
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 825
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 857
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1416829972
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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