Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060786.seq
         (639 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g47880.1 68418.m05915 eukaryotic peptide chain release factor...    89   2e-18
At3g26618.1 68416.m03325 eukaryotic release factor 1 family prot...    87   1e-17
At1g12920.1 68414.m01500 eukaryotic release factor 1 family prot...    87   1e-17
At4g02420.1 68417.m00327 lectin protein kinase, putative similar...    30   1.5  
At1g21640.1 68414.m02709 ATP-NAD kinase family protein contains ...    29   2.0  
At4g14480.1 68417.m02233 protein kinase family protein contains ...    29   3.4  
At3g59610.1 68416.m06651 F-box family protein / jacalin lectin f...    28   6.0  
At2g44830.1 68415.m05582 protein kinase, putative similar to pro...    27   7.9  
At1g60280.1 68414.m06788 no apical meristem (NAM) protein-relate...    27   7.9  

>At5g47880.1 68418.m05915 eukaryotic peptide chain release factor
           subunit 1-1 (ERF1-1) identical to SP|Q39097 Eukaryotic
           peptide chain release factor subunit 1-1 (eRF1-1)
           (Eukaryotic release factor 1-1) (Omnipotent suppressor
           protein 1 homolog 1) (SUP1 homolog 1) {Arabidopsis
           thaliana}, eukaryotic release factor 1 homolog
           GI:1155261 from [Arabidopsis thaliana]; contains Pfam
           profiles: PF03463 eRF1 domain 1, PF03464 eRF1 domain 2,
           PF03465 eRF1 domain 3
          Length = 436

 Score = 89.4 bits (212), Expect = 2e-18
 Identities = 39/54 (72%), Positives = 49/54 (90%)
 Frame = +3

Query: 348 MSEESSADRNVEIWKIKKLIKSLEMARGNGTSMISLIIPPKDQISRVSKMLADD 509
           M +++  D+N+EIWKIKKLIKSLE ARGNGTSMISLI+PP+DQ+SRV+KML D+
Sbjct: 1   MGDKNDDDKNIEIWKIKKLIKSLEAARGNGTSMISLIMPPRDQVSRVTKMLGDE 54



 Score = 67.3 bits (157), Expect = 8e-12
 Identities = 33/43 (76%), Positives = 36/43 (83%)
 Frame = +2

Query: 491 KDVG**FGTASNIKSRVNRLSVLGAITSVQHRLKLYTKVPPNG 619
           K +G  +GTASNIKSRVNR SVLGAITS Q RLKLY +VPPNG
Sbjct: 49  KMLGDEYGTASNIKSRVNRQSVLGAITSAQQRLKLYNRVPPNG 91


>At3g26618.1 68416.m03325 eukaryotic release factor 1 family protein
           / eRF1 family protein contains Pfam profiles: PF03463
           eRF1 domain 1, PF03464 eRF1 domain 2, PF03465 eRF1
           domain 3
          Length = 435

 Score = 86.6 bits (205), Expect = 1e-17
 Identities = 37/51 (72%), Positives = 47/51 (92%)
 Frame = +3

Query: 357 ESSADRNVEIWKIKKLIKSLEMARGNGTSMISLIIPPKDQISRVSKMLADD 509
           +  +D+N+EIWKIKKLIK LE ARGNGTSMISLI+PP+DQ++RV+KMLAD+
Sbjct: 3   DQESDKNIEIWKIKKLIKGLETARGNGTSMISLIMPPRDQVARVTKMLADE 53



 Score = 65.7 bits (153), Expect = 2e-11
 Identities = 31/37 (83%), Positives = 32/37 (86%)
 Frame = +2

Query: 509 FGTASNIKSRVNRLSVLGAITSVQHRLKLYTKVPPNG 619
           +GTASNIKSRVNR SVL AITS Q RLKLY KVPPNG
Sbjct: 54  YGTASNIKSRVNRQSVLSAITSAQQRLKLYNKVPPNG 90


>At1g12920.1 68414.m01500 eukaryotic release factor 1 family protein
           / eRF1 family protein contains Pfam profiles: PF03463
           eRF1 domain 1, PF03464 eRF1 domain 2, PF03465 eRF1
           domain 3
          Length = 434

 Score = 86.6 bits (205), Expect = 1e-17
 Identities = 41/54 (75%), Positives = 48/54 (88%)
 Frame = +3

Query: 348 MSEESSADRNVEIWKIKKLIKSLEMARGNGTSMISLIIPPKDQISRVSKMLADD 509
           M+EE  AD N+EIWKIKKLIK LE ARGNGTSMISLI+PP+DQ+SRV+KML D+
Sbjct: 1   MAEE--ADTNIEIWKIKKLIKGLESARGNGTSMISLIMPPRDQVSRVTKMLGDE 52



 Score = 62.9 bits (146), Expect = 2e-10
 Identities = 32/43 (74%), Positives = 34/43 (79%)
 Frame = +2

Query: 491 KDVG**FGTASNIKSRVNRLSVLGAITSVQHRLKLYTKVPPNG 619
           K +G  +GTASNIKSRVNR SVL AITS Q RLKLY KVP NG
Sbjct: 47  KMLGDEYGTASNIKSRVNRQSVLSAITSAQQRLKLYNKVPTNG 89


>At4g02420.1 68417.m00327 lectin protein kinase, putative similar to
           receptor lectin kinase 3 [Arabidopsis thaliana]
           gi|4100060|gb|AAD00733; contains protein kinase domain,
           Pfam:PF00069; contains legume lectins alpha and beta
           domains, Pfam:PF00138 and Pfam:PF00139
          Length = 669

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 19/60 (31%), Positives = 30/60 (50%)
 Frame = +3

Query: 246 YSFFKVLVLCKDIILVIYTNIVFVVN*LNKKRNKMSEESSADRNVEIWKIKKLIKSLEMA 425
           Y F+K  V    ++L+ +  I+F+V  + K+R K +EE   D   E  K +   K L  A
Sbjct: 288 YRFYKNWVPLISLLLIPFLLIIFLVRFIMKRRRKFAEEVE-DWETEFGKNRLRFKDLYYA 346


>At1g21640.1 68414.m02709 ATP-NAD kinase family protein contains
           similarity to NAD kinase [Homo sapiens]
           gi|20070086|gb|AAM01195; contains Pfam domain, PF01513:
           ATP-NAD kinase
          Length = 985

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +3

Query: 408 KSLEMARGNGTSMISLIIPPKDQISR 485
           KS+   RGNG S   + +PP D +SR
Sbjct: 561 KSISDNRGNGFSAAPIAVPPSDNLSR 586


>At4g14480.1 68417.m02233 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 487

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 16/54 (29%), Positives = 30/54 (55%)
 Frame = +3

Query: 339 RNKMSEESSADRNVEIWKIKKLIKSLEMARGNGTSMISLIIPPKDQISRVSKML 500
           +N+  E    D+++ + K+K L KSLE  R   + +I  +   K++ SR  ++L
Sbjct: 407 KNQEGEVVGFDKDLVLEKLKVLKKSLEHQRARVSIIIEALSGDKEEKSREEELL 460


>At3g59610.1 68416.m06651 F-box family protein / jacalin lectin
           family protein contains Pfam profile PF01419:
           Jacalin-like lectin domain
          Length = 521

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 12/45 (26%), Positives = 25/45 (55%)
 Frame = +3

Query: 348 MSEESSADRNVEIWKIKKLIKSLEMARGNGTSMISLIIPPKDQIS 482
           + +E    RN+EIW  K+ IK+ +       +++S+++P    +S
Sbjct: 251 LEQEIYNTRNIEIWVTKETIKNGDGEAVEWVNLMSVLVPEWSSLS 295


>At2g44830.1 68415.m05582 protein kinase, putative similar to
           protein kinase PVPK-1 [Phaseolus vulgaris]
           SWISS-PROT:P15792
          Length = 765

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 16/44 (36%), Positives = 24/44 (54%)
 Frame = +3

Query: 402 LIKSLEMARGNGTSMISLIIPPKDQISRVSKMLADDLVQLPISS 533
           L+KS+   +G     ISL +PPK    RV    A+ +V+ P +S
Sbjct: 172 LMKSMSTTKGPFIEDISLCVPPKKPSPRVLSP-AESIVEEPATS 214


>At1g60280.1 68414.m06788 no apical meristem (NAM) protein-related
           contains Pfam PF02365: No apical meristem (NAM) protein;
           contains similarity to NAM-like protein GI:4337200 from
           [Arabidopsis thaliana]
          Length = 347

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +1

Query: 460 FHLRIKSREYQRCWLMIWYSFQYQVTCE 543
           F L+ K REY+R W+M  Y     + C+
Sbjct: 128 FCLKKKPREYKRSWVMEEYRLNNNLNCK 155


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,783,910
Number of Sequences: 28952
Number of extensions: 276991
Number of successful extensions: 697
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 672
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 697
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1314848736
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)