Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060785.seq
         (639 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembran...    26   0.30 
AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembran...    26   0.30 
AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain tran...    25   0.40 
AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia or...    25   0.40 
AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia or...    25   0.40 
AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...    24   0.93 
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      23   1.6  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      23   1.6  
AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.    23   2.8  
AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.    23   2.8  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    22   5.0  
DQ659253-1|ABG47451.1|  439|Tribolium castaneum imaginal disc gr...    21   6.6  
DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired pr...    21   6.6  

>AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembrane
           transporter protein.
          Length = 669

 Score = 25.8 bits (54), Expect = 0.30
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -2

Query: 584 WKWMLSLGWLVYGIGDLMI 528
           +KW+  L W  YG G LMI
Sbjct: 585 FKWLSFLSWFRYGNGALMI 603


>AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembrane
           transporter white protein.
          Length = 669

 Score = 25.8 bits (54), Expect = 0.30
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -2

Query: 584 WKWMLSLGWLVYGIGDLMI 528
           +KW+  L W  YG G LMI
Sbjct: 585 FKWLSFLSWFRYGNGALMI 603


>AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain
           transcription factor Maxillopediaprotein.
          Length = 523

 Score = 25.4 bits (53), Expect = 0.40
 Identities = 11/30 (36%), Positives = 20/30 (66%)
 Frame = +3

Query: 285 RTSPPSSKATATRILSILKLSFFLPPLASK 374
           R+SP ++ A A+  ++I  +S  +PP AS+
Sbjct: 250 RSSPTTATAIASATVTIQNVSNTIPPFASR 279


>AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 471

 Score = 25.4 bits (53), Expect = 0.40
 Identities = 11/30 (36%), Positives = 20/30 (66%)
 Frame = +3

Query: 285 RTSPPSSKATATRILSILKLSFFLPPLASK 374
           R+SP ++ A A+  ++I  +S  +PP AS+
Sbjct: 198 RSSPTTATAIASATVTIQNVSNTIPPFASR 227


>AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 477

 Score = 25.4 bits (53), Expect = 0.40
 Identities = 11/30 (36%), Positives = 20/30 (66%)
 Frame = +3

Query: 285 RTSPPSSKATATRILSILKLSFFLPPLASK 374
           R+SP ++ A A+  ++I  +S  +PP AS+
Sbjct: 381 RSSPTTATAIASATVTIQNVSNTIPPFASR 410


>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score = 24.2 bits (50), Expect = 0.93
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +3

Query: 9   SAASAIPSLVNAFSSSKPPQTDNPSAR 89
           +AA  +P + N  S   PP T+N  A+
Sbjct: 209 TAAFMLPIIHNLLSDKNPPNTENNCAQ 235


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = +1

Query: 481 PYASSYPPLHLGYINPIIKSPIPYTNHPRLNIHFHQSP 594
           P+ SS+P +    + P  K  +P  NH  LN+   + P
Sbjct: 241 PHLSSHPAI----VTPGPKQELPDLNHKPLNLTIKKMP 274


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = +1

Query: 481 PYASSYPPLHLGYINPIIKSPIPYTNHPRLNIHFHQSP 594
           P+ SS+P +    + P  K  +P  NH  LN+   + P
Sbjct: 133 PHLSSHPAI----VTPGPKQELPDLNHKPLNLTIKKMP 166


>AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.
          Length = 712

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 9/25 (36%), Positives = 12/25 (48%)
 Frame = -1

Query: 255 WFRCQ*DRSTGVEKG*SNVEETVPG 181
           W  CQ   + GVE+G       +PG
Sbjct: 149 WSHCQCVLADGVERGILTANRMIPG 173


>AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.
          Length = 717

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 9/25 (36%), Positives = 12/25 (48%)
 Frame = -1

Query: 255 WFRCQ*DRSTGVEKG*SNVEETVPG 181
           W  CQ   + GVE+G       +PG
Sbjct: 149 WSHCQCVLADGVERGILTANRMIPG 173


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 9/31 (29%), Positives = 13/31 (41%)
 Frame = +3

Query: 528  DHQIPDSIHQPPQT*HPFPSIPWWRTRRSSR 620
            +H  PD   +P        + PWW T  + R
Sbjct: 1029 EHMHPDWTTKPSTWWSSTTTSPWWTTTTTRR 1059


>DQ659253-1|ABG47451.1|  439|Tribolium castaneum imaginal disc
           growth factor 2 protein.
          Length = 439

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +2

Query: 266 VTVQSLPNVSSIIKGYRDAYLVNLEAVV 349
           VT+  LPNV+S +     A   NLE VV
Sbjct: 215 VTLTVLPNVNSTVYYDPRALSPNLEFVV 242


>DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired
           protein.
          Length = 311

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = +3

Query: 495 LPSPASRLHQPDHQIPDSIHQP 560
           L SP+S    P+ + P+S+ +P
Sbjct: 282 LQSPSSTSSSPEPRSPESLFKP 303


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 141,989
Number of Sequences: 336
Number of extensions: 2998
Number of successful extensions: 14
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 16501678
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)