Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060785.seq
(639 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 31 0.11
SPBC725.03 |||conserved fungal protein|Schizosaccharomyces pombe... 29 0.57
SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger protein|Schiz... 28 0.99
SPAC57A7.07c |||homocysteine methyltransferase |Schizosaccharomy... 28 1.3
SPAC6G9.11 |syb1||synaptobrevin |Schizosaccharomyces pombe|chr 1... 28 1.3
SPAC644.06c |cdr1|nim1|GIN4 family protein kinase Cdr1|Schizosac... 28 1.3
SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr 1|... 27 3.0
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 27 3.0
SPBC28F2.06c |mdm12||Mdm10/Mdm12/Mmm1 complex subunit Mdm12|Schi... 27 3.0
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 26 4.0
SPBC4C3.12 |sep1||fork head transcription factor Sep1|Schizosacc... 26 4.0
SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces po... 26 5.3
SPAPB1E7.06c |eme1||Holliday junction resolvase subunit Eme1|Sch... 26 5.3
SPAC821.04c |cid13||poly|Schizosaccharomyces pombe|chr 1|||Manual 26 5.3
SPBC36B7.04 |||tRNA dihydrouridine synthase Dus1 |Schizosaccharo... 25 7.0
SPBC6B1.05c |||ubiquitin-like conjugating enzyme|Schizosaccharom... 25 9.2
SPCC4B3.10c |ipk1||inositol 1,3,4,5,6-pentakisphosphate |Schizos... 25 9.2
SPAC29B12.04 |snz1||pyridoxine biosynthesis protein|Schizosaccha... 25 9.2
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 31.5 bits (68), Expect = 0.11
Identities = 33/139 (23%), Positives = 52/139 (37%), Gaps = 4/139 (2%)
Frame = +2
Query: 182 PGTVSSTFDHPFSTPVLRSYWHRNQSNSVTVQSLPNVSSIIKG--YRDAYLVNLEAVVFP 355
P T +ST + P S +N T S+P S+ + +V +
Sbjct: 400 PPTGNSTTPVTPTVPPTSSSTPLTTTNCTTSTSVPYTSTPVTSTPLATTNCTTSTSVPYT 459
Query: 356 SAPSLKIPVTVDLCWTTADVTVEGVNVLATPSSARITIGGLALMHQATLPCISATSTRSS 535
S P P+T C T+ + V +TP + ++ + +T S + SS
Sbjct: 460 STPVTSTPLTTTNCTTSTSIPYTSTPVTSTPLTTTNCTTSTSVPYTSTPVTSSNYTISSS 519
Query: 536 NPRFHTP--TTPDLTSISI 586
P TP TT TS S+
Sbjct: 520 TPVTSTPVTTTNCTTSTSV 538
Score = 29.5 bits (63), Expect = 0.43
Identities = 24/94 (25%), Positives = 36/94 (38%), Gaps = 2/94 (2%)
Frame = +2
Query: 311 YRDAYLVNLEAVVFPSAPSLKIPVTVDLCWTTADVTVEGVNVLATPSSARITIGGLALMH 490
Y + + + S P PVT C T+ V V +TP + ++ +
Sbjct: 504 YTSTPVTSSNYTISSSTPVTSTPVTTTNCTTSTSVLYTSTPVTSTPLATTNCTTSTSVPY 563
Query: 491 QATLPCISATSTRSSNPRFHTP--TTPDLTSISI 586
+T S + SS P TP TT TS S+
Sbjct: 564 TSTPVTSSNYTISSSTPVTSTPVTTTNCTTSTSV 597
Score = 29.1 bits (62), Expect = 0.57
Identities = 20/76 (26%), Positives = 34/76 (44%)
Frame = +2
Query: 365 SLKIPVTVDLCWTTADVTVEGVNVLATPSSARITIGGLALMHQATLPCISATSTRSSNPR 544
S +P T C T+ + G + L+TP + + + +P S +ST +++
Sbjct: 219 SSPLPTTSTSCTTSTSIPTGGSSSLSTPITPTVPPTSTS-STSIPIPPTSTSSTDTNSSP 277
Query: 545 FHTPTTPDLTSISINP 592
T +T TS SI P
Sbjct: 278 LPTTSTSCTTSTSIPP 293
>SPBC725.03 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 257
Score = 29.1 bits (62), Expect = 0.57
Identities = 21/76 (27%), Positives = 33/76 (43%), Gaps = 4/76 (5%)
Frame = +2
Query: 242 WHRNQSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSLKIPVTVDLC-W---TTA 409
WH+ + + V L S+ I ++ A + + FPS P IP ++C W T
Sbjct: 56 WHKPRPDDVLATDLLVFSTDIASHKAAEIAEQQKNTFPSGP---IPNAFEMCGWLPKTMQ 112
Query: 410 DVTVEGVNVLATPSSA 457
+ + G L TP A
Sbjct: 113 QIRISGQIWLYTPELA 128
>SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 547
Score = 28.3 bits (60), Expect = 0.99
Identities = 34/106 (32%), Positives = 49/106 (46%), Gaps = 3/106 (2%)
Frame = +2
Query: 275 QSLPNVS--SIIKGYRDAYLVNLEAVVFPSAPSLKIPVTVDLCWTTADVTVEGVNVLATP 448
QSL N+S S I R N A FPS S +P VDL DV+ E L+TP
Sbjct: 321 QSLGNLSLGSGINQRRQVPRSNSYAGAFPSVVSASLPTKVDLN-HQMDVSDEEQRFLSTP 379
Query: 449 -SSARITIGGLALMHQATLPCISATSTRSSNPRFHTPTTPDLTSIS 583
S +I G + +++ + TS+ S P T T+ + S++
Sbjct: 380 LGSFDESILGSSPINRLSSSFKQYTSSLKS-PGLSTRTSSTMNSLN 424
>SPAC57A7.07c |||homocysteine methyltransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 308
Score = 27.9 bits (59), Expect = 1.3
Identities = 16/41 (39%), Positives = 19/41 (46%), Gaps = 4/41 (9%)
Frame = +3
Query: 495 LPSPASRLHQPD----HQIPDSIHQPPQT*HPFPSIPWWRT 605
LPS + + PD +Q PD P T HP PS W T
Sbjct: 234 LPSNITAILYPDGRGLYQNPDGTFSPGSTDHPAPSPEEWST 274
>SPAC6G9.11 |syb1||synaptobrevin |Schizosaccharomyces pombe|chr
1|||Manual
Length = 121
Score = 27.9 bits (59), Expect = 1.3
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = -1
Query: 486 IRARPPIVMRADEGVASTLTPSTVTSAVVQQRSTVTGILR 367
I A P +R+ AS+ TP+ T+A+ QQ GI+R
Sbjct: 9 IPAEPSAAVRSGNAAASS-TPNMKTAAIQQQIDDTVGIMR 47
>SPAC644.06c |cdr1|nim1|GIN4 family protein kinase
Cdr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 593
Score = 27.9 bits (59), Expect = 1.3
Identities = 20/51 (39%), Positives = 26/51 (50%)
Frame = +2
Query: 452 SARITIGGLALMHQATLPCISATSTRSSNPRFHTPTTPDLTSISINPLVAD 604
S RITI + H + C S +S S+ TP TP L+ I+PLV D
Sbjct: 244 STRITIPEV-FSHPFLMGCTSLSSMDST-----TPPTPSLSIDEIDPLVVD 288
>SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1036
Score = 26.6 bits (56), Expect = 3.0
Identities = 16/30 (53%), Positives = 21/30 (70%)
Frame = +2
Query: 302 IKGYRDAYLVNLEAVVFPSAPSLKIPVTVD 391
+K RD YL NLEA FPS+ +KI +T+D
Sbjct: 378 LKTRRDQYLTNLEA--FPSSLFMKI-LTLD 404
>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 446
Score = 26.6 bits (56), Expect = 3.0
Identities = 13/50 (26%), Positives = 22/50 (44%)
Frame = +2
Query: 401 TTADVTVEGVNVLATPSSARITIGGLALMHQATLPCISATSTRSSNPRFH 550
+ +DV V+ N L + + ++ A L I+A + NP FH
Sbjct: 177 SVSDVVVQPYNSLLALKRLTLNADSVVVLDNAALAHIAADRLHTQNPTFH 226
>SPBC28F2.06c |mdm12||Mdm10/Mdm12/Mmm1 complex subunit
Mdm12|Schizosaccharomyces pombe|chr 2|||Manual
Length = 273
Score = 26.6 bits (56), Expect = 3.0
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = +1
Query: 481 PYASSYPPLHLGYINPIIKSP 543
PYA+ +P L Y NP SP
Sbjct: 96 PYAAEHPFSRLAYFNPAFNSP 116
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 26.2 bits (55), Expect = 4.0
Identities = 12/25 (48%), Positives = 13/25 (52%)
Frame = +2
Query: 509 ISATSTRSSNPRFHTPTTPDLTSIS 583
IS +ST N FH PT TS S
Sbjct: 804 ISTSSTNEYNTSFHAPTVSSTTSSS 828
>SPBC4C3.12 |sep1||fork head transcription factor
Sep1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 663
Score = 26.2 bits (55), Expect = 4.0
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = +3
Query: 297 PSSKATATRILSILKLSFFLPPL 365
PSSKAT I S +L++ +PPL
Sbjct: 66 PSSKATRPYIPSYTRLTYSVPPL 88
>SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 658
Score = 25.8 bits (54), Expect = 5.3
Identities = 18/70 (25%), Positives = 33/70 (47%), Gaps = 4/70 (5%)
Frame = +2
Query: 401 TTADVTVEGVNVLATPSSARITIGGLALMHQATLPCISATST----RSSNPRFHTPTTPD 568
TT +E + + TP TI ++ T+ ++A +T ++ P T TTP
Sbjct: 54 TTMTTPMEEITTITTPMEETTTI--TPMVETTTILPMAAMTTPMVETTTIPTVETTTTPM 111
Query: 569 LTSISINPLV 598
+ + +I P+V
Sbjct: 112 VETTTITPMV 121
>SPAPB1E7.06c |eme1||Holliday junction resolvase subunit
Eme1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 738
Score = 25.8 bits (54), Expect = 5.3
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = +2
Query: 503 PCISATSTRSSNPRFHTPTTPDL 571
PC+ + ++ +SN H P+TP+L
Sbjct: 241 PCMPSIASPTSNRLSHAPSTPNL 263
>SPAC821.04c |cid13||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 578
Score = 25.8 bits (54), Expect = 5.3
Identities = 16/49 (32%), Positives = 22/49 (44%)
Frame = +1
Query: 412 RHS*RSQCAGHPFIRSHYYWRSRPYASSYPPLHLGYINPIIKSPIPYTN 558
R S + C P SH+ W PY ++ P Y N I S I Y++
Sbjct: 399 RDSSDTSCTESPPEPSHFAWAFDPYNATASP----YYNQNINSSIDYSS 443
>SPBC36B7.04 |||tRNA dihydrouridine synthase Dus1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 399
Score = 25.4 bits (53), Expect = 7.0
Identities = 8/19 (42%), Positives = 12/19 (63%)
Frame = +3
Query: 579 FPSIPWWRTRRSSRGVKAP 635
+P IPWWR + R ++ P
Sbjct: 355 YPVIPWWRVQPYIRPLEVP 373
>SPBC6B1.05c |||ubiquitin-like conjugating
enzyme|Schizosaccharomyces pombe|chr 2|||Manual
Length = 649
Score = 25.0 bits (52), Expect = 9.2
Identities = 14/51 (27%), Positives = 23/51 (45%)
Frame = +2
Query: 215 FSTPVLRSYWHRNQSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPS 367
F + + ++WH+ + V Q L I G + Y ++VF APS
Sbjct: 12 FHSSIDATFWHQLSNYKVEKQKLDASPLTIHGKFNTYSRGNISIVFGEAPS 62
>SPCC4B3.10c |ipk1||inositol 1,3,4,5,6-pentakisphosphate
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 640
Score = 25.0 bits (52), Expect = 9.2
Identities = 13/28 (46%), Positives = 15/28 (53%)
Frame = +1
Query: 523 NPIIKSPIPYTNHPRLNIHFHQSPGGGL 606
NP+ KSP PY+ P I H S G L
Sbjct: 360 NPLFKSPAPYS--PTSVISNHSSTGKSL 385
>SPAC29B12.04 |snz1||pyridoxine biosynthesis
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 296
Score = 25.0 bits (52), Expect = 9.2
Identities = 24/78 (30%), Positives = 34/78 (43%), Gaps = 1/78 (1%)
Frame = -1
Query: 591 GLMEMDVKSGVV-GVWNRGFDDRVDVAEMQGRVA*CIRARPPIVMRADEGVASTLTPSTV 415
GL +M +K GV+ V N ++ +AE G A R P +RA GVA PS +
Sbjct: 14 GLAQM-LKGGVIMDVVNA---EQARIAEAAGACAVMALERVPADIRAQGGVARMSDPSMI 69
Query: 414 TSAVVQQRSTVTGILRLG 361
V +R+G
Sbjct: 70 KEIQAAVSIPVMAKVRIG 87
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,528,790
Number of Sequences: 5004
Number of extensions: 49313
Number of successful extensions: 208
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 196
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 207
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 285732116
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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