Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060785.seq
(639 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0925 - 7306881-7308486,7308797-7308906 30 1.3
01_01_0448 - 3332238-3332330,3332414-3332481,3332570-3332618,333... 30 1.3
09_04_0375 - 17055024-17055956,17056045-17056296 29 2.4
06_03_0912 + 25896152-25896451,25896528-25897296,25897492-258976... 29 3.1
03_04_0192 + 18302114-18302362,18302664-18302732,18302752-183028... 29 3.1
12_02_0985 + 25052753-25053691 29 4.1
08_02_0402 - 16769239-16769504,16769842-16770016,16772762-167730... 29 4.1
07_03_0909 + 22512313-22512474,22513151-22513465,22513539-225166... 29 4.1
03_02_0146 + 5916692-5917931,5918198-5918261,5918836-5919057,591... 29 4.1
02_01_0219 - 1437685-1437723,1437932-1438091,1438385-1438514,143... 29 4.1
01_05_0227 - 19512866-19514983 29 4.1
07_01_0756 + 5819367-5820038,5820847-5821005 28 7.2
02_05_0788 + 31758119-31758384,31758482-31758634,31759385-317595... 28 7.2
02_05_0345 - 28142434-28142658,28143087-28143158,28143252-281433... 28 7.2
11_05_0006 + 18316064-18316258,18316458-18316507,18317826-183178... 27 9.5
05_07_0146 + 28018236-28018580,28018670-28018777,28018984-280191... 27 9.5
>01_01_0925 - 7306881-7308486,7308797-7308906
Length = 571
Score = 30.3 bits (65), Expect = 1.3
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Frame = +1
Query: 469 WRSRPYASSYPPLHLGYINPIIKSPIPYTNHPRLNI-HFHQSPGGGLEGVRAG 624
W++RP A++ P+H Y + P+T PRL++ H GL GV G
Sbjct: 62 WKARPTAAARTPVHHHYARSPAREAAPHT-PPRLSLSSVHGVELPGLVGVGGG 113
>01_01_0448 -
3332238-3332330,3332414-3332481,3332570-3332618,
3332716-3332798,3332900-3333023,3333389-3333486,
3333555-3333634,3333712-3333782,3333872-3333953,
3334158-3334237,3334365-3334416,3334843-3334958
Length = 331
Score = 30.3 bits (65), Expect = 1.3
Identities = 12/18 (66%), Positives = 14/18 (77%)
Frame = +2
Query: 512 SATSTRSSNPRFHTPTTP 565
S+T+TR S PR H PTTP
Sbjct: 4 SSTATRLSPPRLHAPTTP 21
>09_04_0375 - 17055024-17055956,17056045-17056296
Length = 394
Score = 29.5 bits (63), Expect = 2.4
Identities = 19/48 (39%), Positives = 25/48 (52%)
Frame = +2
Query: 422 EGVNVLATPSSARITIGGLALMHQATLPCISATSTRSSNPRFHTPTTP 565
E N A SSA + G+ H + PC A S R+S+P H PT+P
Sbjct: 314 EAGNSSAARSSAPTKLFGV---HLSAAPC-GAGSKRASSPEEHPPTSP 357
>06_03_0912 + 25896152-25896451,25896528-25897296,25897492-25897658,
25898932-25901013,25901155-25901730,25904503-25905648,
25907056-25908693
Length = 2225
Score = 29.1 bits (62), Expect = 3.1
Identities = 9/28 (32%), Positives = 17/28 (60%)
Frame = +1
Query: 190 GLLNV*SSLFNACTSILLAPKPIEQCHC 273
G +N+ ++C ++ P+PI+ CHC
Sbjct: 1570 GCVNLLYLTIDSCIDLITLPEPIKNCHC 1597
>03_04_0192 +
18302114-18302362,18302664-18302732,18302752-18302823,
18303545-18303710,18303967-18304604
Length = 397
Score = 29.1 bits (62), Expect = 3.1
Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Frame = +2
Query: 443 TPSSARITIGGLALMHQATLPCISATSTRSSNPRFHTPT-TPDLTSISINP 592
TP+S++ T G A+ A +P + + ++N TPT P + + NP
Sbjct: 29 TPASSKATAGAAAVGRAARIPASRSRGSATTNKAMATPTVAPSSRAKASNP 79
>12_02_0985 + 25052753-25053691
Length = 312
Score = 28.7 bits (61), Expect = 4.1
Identities = 19/60 (31%), Positives = 28/60 (46%)
Frame = -1
Query: 486 IRARPPIVMRADEGVASTLTPSTVTSAVVQQRSTVTGILRLGAEGKTTASRLTRYASR*P 307
+ +R + +R D S+ + +T S + S + GAEG TTAS LT S P
Sbjct: 127 VSSRTGLFLRGDCHRNSSASNATNCSIPAETMSRMVPTASCGAEGNTTASALTCVTSTSP 186
>08_02_0402 -
16769239-16769504,16769842-16770016,16772762-16773028,
16773156-16773368
Length = 306
Score = 28.7 bits (61), Expect = 4.1
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = +1
Query: 514 GYINPIIKSPIPYTNHPRLNIHFHQSPGGG 603
G ++ ++++ IP N R IH H S GG
Sbjct: 128 GKVHDVLQAVIPRRNQTRQRIHIHTSRAGG 157
>07_03_0909 +
22512313-22512474,22513151-22513465,22513539-22516633,
22516812-22516910,22517031-22517379
Length = 1339
Score = 28.7 bits (61), Expect = 4.1
Identities = 25/83 (30%), Positives = 39/83 (46%), Gaps = 8/83 (9%)
Frame = +2
Query: 380 VTVDLCWTTA------DVTVEGVNVLATPSSARITIGGLALMHQATLPC-ISATSTRSSN 538
+T WTTA + ++G +VL TP S + ++L H T PC ++ S S N
Sbjct: 340 ITHRFAWTTAVSETSIALVIDGSHVLVTPLSLGLMPPPMSLFH-LTFPCAVNEVSFLSYN 398
Query: 539 PRFHTPTTPDLTSISINPL-VAD 604
+ H S+ ++ L VAD
Sbjct: 399 SKNHIAAYLSNGSLCVSVLPVAD 421
>03_02_0146 + 5916692-5917931,5918198-5918261,5918836-5919057,
5919626-5919747,5920105-5920170,5920192-5920386,
5920480-5921057,5921818-5921968,5922465-5922715
Length = 962
Score = 28.7 bits (61), Expect = 4.1
Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Frame = +3
Query: 498 PSPASRLHQ-PDHQIPDSIHQPPQT*HPFPSIPWWRTRRSSR 620
P P S+ H PD+QI D P++ P P+ R R + R
Sbjct: 876 PKPTSKFHDAPDNQIQDRKRDHPESPEPSPADTLKRLRVNGR 917
>02_01_0219 -
1437685-1437723,1437932-1438091,1438385-1438514,
1438627-1438696,1439264-1439407,1439771-1439837,
1439970-1440019,1440386-1440559,1440881-1440934,
1441008-1441112
Length = 330
Score = 28.7 bits (61), Expect = 4.1
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = +2
Query: 371 KIPVTVDLCWTTADVTVEGVNVLATPSSARITIGGLALMHQ 493
K+ V +D TAD+++ +N+L P G L+HQ
Sbjct: 209 KVAVMMDDMIDTADISLPNINILMKPIKLGTIAKGAELLHQ 249
>01_05_0227 - 19512866-19514983
Length = 705
Score = 28.7 bits (61), Expect = 4.1
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = -1
Query: 423 STVTSAVVQQRSTVTGILRLGAEGKTTASRL 331
S +T + +QQ + ++ LG GKTT ++L
Sbjct: 18 SKLTESSIQQNIKIVSVIGLGGSGKTTLAKL 48
>07_01_0756 + 5819367-5820038,5820847-5821005
Length = 276
Score = 27.9 bits (59), Expect = 7.2
Identities = 12/19 (63%), Positives = 13/19 (68%)
Frame = -2
Query: 65 RGFGRRESIDQGRNGRSGR 9
RGFGR D+GR GR GR
Sbjct: 19 RGFGRGGRGDRGRGGRGGR 37
>02_05_0788 +
31758119-31758384,31758482-31758634,31759385-31759509,
31759650-31759678,31760943-31761008,31761059-31761125,
31761226-31761370,31761404-31761451,31762014-31762182,
31762645-31762779,31762858-31763064,31763608-31763735,
31763815-31763866,31764046-31764060,31764502-31764609
Length = 570
Score = 27.9 bits (59), Expect = 7.2
Identities = 18/70 (25%), Positives = 32/70 (45%)
Frame = +2
Query: 260 NSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSLKIPVTVDLCWTTADVTVEGVNVL 439
N TV + N + GY+ +N+ + PSLK D C T ++ +EG++ L
Sbjct: 219 NEKTVNVIENAIQTLPGYQPPKHINIGEYISSHVPSLK-----DFCEPTVEM-LEGMSAL 272
Query: 440 ATPSSARITI 469
S+ + +
Sbjct: 273 KALSTVMLLL 282
>02_05_0345 -
28142434-28142658,28143087-28143158,28143252-28143371,
28143483-28143674,28144919-28145017,28145448-28145594,
28146310-28146513
Length = 352
Score = 27.9 bits (59), Expect = 7.2
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = -3
Query: 496 SLMHKGETANSNASG*RGGQHIDSFNCD 413
S+ G +AN SG R G H SF+CD
Sbjct: 15 SVSGDGRSANGAGSGKRVGTHNGSFHCD 42
>11_05_0006 +
18316064-18316258,18316458-18316507,18317826-18317886,
18317972-18318007,18318852-18318902,18321271-18321375,
18321508-18321600,18321698-18321841
Length = 244
Score = 27.5 bits (58), Expect = 9.5
Identities = 12/30 (40%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Frame = -1
Query: 615 NSF*SATRGLMEMDV-KSGVVGVWNRGFDD 529
NS+ AT ++ + K+G V +W++GFDD
Sbjct: 164 NSWSGATYCTSDLSIHKNGEVHIWDKGFDD 193
>05_07_0146 +
28018236-28018580,28018670-28018777,28018984-28019148,
28019269-28019736,28019823-28019936,28020038-28020715
Length = 625
Score = 27.5 bits (58), Expect = 9.5
Identities = 17/49 (34%), Positives = 25/49 (51%)
Frame = +2
Query: 446 PSSARITIGGLALMHQATLPCISATSTRSSNPRFHTPTTPDLTSISINP 592
PS+ + G + +A LPC S +T S++ F T T DLT + P
Sbjct: 447 PSADGSLMAGSNFLARAVLPCSSTVATISASAPFPT-VTLDLTQTAPPP 494
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,766,386
Number of Sequences: 37544
Number of extensions: 371551
Number of successful extensions: 1372
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1313
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1372
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1573040476
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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