Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060785.seq
         (639 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_30122| Best HMM Match : YadA (HMM E-Value=2)                        30   1.4  
SB_24975| Best HMM Match : ET (HMM E-Value=1)                          30   1.8  
SB_10901| Best HMM Match : SAM_1 (HMM E-Value=2.5e-09)                 29   3.2  
SB_6924| Best HMM Match : TTL (HMM E-Value=4.4e-09)                    29   3.2  
SB_42986| Best HMM Match : Glycos_transf_4 (HMM E-Value=1.5)           28   5.6  
SB_35812| Best HMM Match : Atrophin-1 (HMM E-Value=0.23)               28   5.6  
SB_39328| Best HMM Match : Laminin_G_2 (HMM E-Value=0)                 28   7.4  
SB_34976| Best HMM Match : N_methyl (HMM E-Value=1.7)                  28   7.4  
SB_34777| Best HMM Match : VWA (HMM E-Value=0)                         28   7.4  
SB_30304| Best HMM Match : fn3 (HMM E-Value=1.5e-32)                   28   7.4  
SB_32383| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.7  
SB_31262| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.7  
SB_8813| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   9.7  

>SB_30122| Best HMM Match : YadA (HMM E-Value=2)
          Length = 408

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = +2

Query: 356 SAPSLKIPVTVDLCWTTADVTVEGVNVLATPSSARIT 466
           S P  K+P+T     T+A+VT    +++ +PS A +T
Sbjct: 239 SRPETKVPITTIGASTSAEVTTSQRDLMPSPSQAHVT 275


>SB_24975| Best HMM Match : ET (HMM E-Value=1)
          Length = 316

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 37/132 (28%), Positives = 49/132 (37%), Gaps = 7/132 (5%)
 Frame = +2

Query: 188 TVSSTFDHPFSTPVLRSYWHRNQSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPS 367
           T   T+  P S+  LRS+ H       TV   P  S I   +R     N      P +PS
Sbjct: 48  TTMCTYKTPLSSSALRSHQH------ATVNQHPPSSWIPLKHRVPVTTNT-----PLSPS 96

Query: 368 LKIPVTVDLCWTT-----ADVTVEGVNVLATPSS--ARITIGGLALMHQATLPCISATST 526
             +  +V +   T     A VT        TP S  A +T       +    P  S T++
Sbjct: 97  ASVTASVSVTPNTPLSPSASVTASVSVTPNTPLSLSASVTASVSVTPNTPQSPSASVTAS 156

Query: 527 RSSNPRFHTPTT 562
            S  P  HTP T
Sbjct: 157 VSVTPNIHTPVT 168


>SB_10901| Best HMM Match : SAM_1 (HMM E-Value=2.5e-09)
          Length = 1472

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = +2

Query: 362 PSLKIPVTVDLCWTTADVTVEGVNVLATPSSARIT 466
           P  K+P+T     T+A+VT    +++ +PS A +T
Sbjct: 816 PETKVPITTIGASTSAEVTTSQRDLMPSPSQAHVT 850


>SB_6924| Best HMM Match : TTL (HMM E-Value=4.4e-09)
          Length = 458

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 18/52 (34%), Positives = 23/52 (44%), Gaps = 2/52 (3%)
 Frame = +1

Query: 376 TSHS*PLLDYC*RHS*RSQCAGHPFIRSHYYWRSRPY--ASSYPPLHLGYIN 525
           T +   LL YC     R   AGHPF+   Y +  R Y   +S  PL +   N
Sbjct: 91  TKYDIDLLGYCTEQEIRRVVAGHPFLLDGYKFDLRVYVLVTSCDPLRIFVYN 142


>SB_42986| Best HMM Match : Glycos_transf_4 (HMM E-Value=1.5)
          Length = 279

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 19/96 (19%), Positives = 41/96 (42%)
 Frame = +2

Query: 290 VSSIIKGYRDAYLVNLEAVVFPSAPSLKIPVTVDLCWTTADVTVEGVNVLATPSSARITI 469
           +SS+   +   +L N++ ++ P    +    +V +  TT+ +         TP+ ++   
Sbjct: 9   ISSLSSSFVINFLNNIDTLILPFVFHIVATTSVVMV-TTSVIPASASGSTITPTPSKTNS 67

Query: 470 GGLALMHQATLPCISATSTRSSNPRFHTPTTPDLTS 577
             +  M +     +  + TRSS+     P  P L+S
Sbjct: 68  FDVLTMTKVVFRTMRVSQTRSSSSSQSLPPPPSLSS 103


>SB_35812| Best HMM Match : Atrophin-1 (HMM E-Value=0.23)
          Length = 4240

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 14/45 (31%), Positives = 21/45 (46%)
 Frame = +1

Query: 472 RSRPYASSYPPLHLGYINPIIKSPIPYTNHPRLNIHFHQSPGGGL 606
           R  P   +   L   Y   +   P+PY +H +   + +QSPG GL
Sbjct: 492 RITPSDEADDQLRYDYSRTLQTGPMPYDSHHKHRANRNQSPGRGL 536


>SB_39328| Best HMM Match : Laminin_G_2 (HMM E-Value=0)
          Length = 1049

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 18/38 (47%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
 Frame = +2

Query: 485 MHQATLPCISATSTRSSNPRFHTPTTPDLT-SISINPL 595
           +H +T   +SAT TRSS   F T TT  +T +IS N L
Sbjct: 184 LHVSTDSWVSATFTRSSTNGFLTVTTEGVTKTISHNSL 221


>SB_34976| Best HMM Match : N_methyl (HMM E-Value=1.7)
          Length = 177

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 16/68 (23%), Positives = 32/68 (47%)
 Frame = -1

Query: 465 VMRADEGVASTLTPSTVTSAVVQQRSTVTGILRLGAEGKTTASRLTRYASR*PLMMEETF 286
           V R      +TLT  T+ ++ +   S+ T    +    KTT S +T  ++  P+++  + 
Sbjct: 81  VPRCISPTTATLTTETIAASQLTPSSSATTTTTIRTNTKTTESTITSLSTSLPVILPTSS 140

Query: 285 GSDCTVTL 262
            S   ++L
Sbjct: 141 KSSSALSL 148


>SB_34777| Best HMM Match : VWA (HMM E-Value=0)
          Length = 1268

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 15/37 (40%), Positives = 24/37 (64%)
 Frame = +2

Query: 272  VQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSLKIPV 382
            ++ + NV+ +    RDA+ V   AVV+ S PSL+IP+
Sbjct: 1101 IEFVKNVTKMFPLSRDAFSVG--AVVYGSEPSLEIPL 1135


>SB_30304| Best HMM Match : fn3 (HMM E-Value=1.5e-32)
          Length = 808

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 24/88 (27%), Positives = 34/88 (38%), Gaps = 2/88 (2%)
 Frame = +2

Query: 251 NQSNSVTVQSLPNVS--SIIKGYRDAYLVNLEAVVFPSAPSLKIPVTVDLCWTTADVTVE 424
           ++++ VT Q  P+ S   +  GY D    N+     PS  S  I V  ++ W     T  
Sbjct: 206 DEAHIVTEQEAPSCSPEDLAVGYSDGKAHNITWSPIPSNQSNGIIVVYEITWVKVANTTR 265

Query: 425 GVNVLATPSSARITIGGLALMHQATLPC 508
               L   SSA  +     L     LPC
Sbjct: 266 SRRALDAASSANTSSTSYRLTD--LLPC 291


>SB_32383| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1850

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 3/36 (8%)
 Frame = +3

Query: 495  LPSPASRLHQPD---HQIPDSIHQPPQT*HPFPSIP 593
            LP P   LHQ     HQ+  ++HQ  +   P P IP
Sbjct: 1130 LPKPTLALHQLTPALHQLTPTLHQLTRALSPLPHIP 1165


>SB_31262| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 358

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 16/51 (31%), Positives = 24/51 (47%)
 Frame = +2

Query: 440 ATPSSARITIGGLALMHQATLPCISATSTRSSNPRFHTPTTPDLTSISINP 592
           A+P+  R ++G LA   + + P   +T    S  R  TP+TP   S    P
Sbjct: 183 ASPA-LRSSLGSLAPTSRTSTPTSRSTPRSRSRSRARTPSTPSTPSTPSTP 232


>SB_8813| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 896

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +2

Query: 239 YWHRNQSNSVTVQSLPNVSSIIKGYRDAYLVNLEA 343
           + H N + +VT+     V  I++G  D Y ++LEA
Sbjct: 263 FGHNNLATNVTLLRALEVEEILEGNDDKYKISLEA 297


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,469,557
Number of Sequences: 59808
Number of extensions: 389263
Number of successful extensions: 1422
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1179
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1417
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1608851125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)