Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060785.seq
         (639 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00046-6|AAN65305.1|  422|Caenorhabditis elegans Mammalian zak k...    31   0.70 
U00046-5|AAC47047.4|  516|Caenorhabditis elegans Mammalian zak k...    31   0.70 
AF025471-5|AAB71064.2|  334|Caenorhabditis elegans Serpentine re...    28   6.5  
U97194-8|AAB52447.3| 1254|Caenorhabditis elegans Prion-like-(q/n...    27   8.6  
U53181-12|AAA93490.1|  134|Caenorhabditis elegans Hypothetical p...    27   8.6  

>U00046-6|AAN65305.1|  422|Caenorhabditis elegans Mammalian zak
           kinase homolog protein1, isoform b protein.
          Length = 422

 Score = 31.1 bits (67), Expect = 0.70
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +2

Query: 185 GTVSSTFDHPFSTPVLRSYWHRNQS 259
           G +++ F H  S+P LR +WHR Q+
Sbjct: 306 GHLNNGFHHTTSSPQLRGFWHRKQT 330


>U00046-5|AAC47047.4|  516|Caenorhabditis elegans Mammalian zak
           kinase homolog protein1, isoform a protein.
          Length = 516

 Score = 31.1 bits (67), Expect = 0.70
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +2

Query: 185 GTVSSTFDHPFSTPVLRSYWHRNQS 259
           G +++ F H  S+P LR +WHR Q+
Sbjct: 400 GHLNNGFHHTTSSPQLRGFWHRKQT 424


>AF025471-5|AAB71064.2|  334|Caenorhabditis elegans Serpentine
           receptor, class h protein195 protein.
          Length = 334

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -1

Query: 588 LMEMDVKSGVVGVWNRGFDDRVDVAEMQGR 499
           L+    ++ V  +WNR F    DV++ QGR
Sbjct: 297 LLHKPYRNAVKEIWNRPFGKSADVSQNQGR 326


>U97194-8|AAB52447.3| 1254|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 20
           protein.
          Length = 1254

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 4/35 (11%)
 Frame = +3

Query: 12  AASAIPSLVNAFSSSKPPQTD----NPSARSMDMQ 104
           +AS  P LVN  S+ +PPQ       PSA+ + MQ
Sbjct: 476 SASNSPLLVNLLSNQQPPQQQYMYPGPSAQGLSMQ 510


>U53181-12|AAA93490.1|  134|Caenorhabditis elegans Hypothetical
           protein F36D4.6 protein.
          Length = 134

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
 Frame = +2

Query: 188 TVSSTFD---HPFSTPVLRSYWHRNQSNSVTVQSLPNVSS 298
           T SS F    HPFS+P LR +       +V + S P V+S
Sbjct: 3   TYSSPFSRLLHPFSSPPLRPHQDSTTRQTVFIYSSPPVNS 42


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,111,500
Number of Sequences: 27780
Number of extensions: 279525
Number of successful extensions: 1027
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 969
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1027
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1416829972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)