Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060785.seq
         (639 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    26   0.27 
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    23   3.3  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    21   7.6  

>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 26.2 bits (55), Expect = 0.27
 Identities = 12/43 (27%), Positives = 23/43 (53%)
 Frame = -3

Query: 370 EARGGRKNDSFKIDKIRVAVAFDDGGDVR**LHSDTVRLVSVP 242
           E    +K D   ID +++ +  DDG D+   +  +  R++S+P
Sbjct: 323 EEENDKKLDLDSIDMMQLPIQLDDGIDILDDVKCEDERVISIP 365


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +3

Query: 579 FPSIPWWRTRRS 614
           FP+I WWR  R+
Sbjct: 179 FPAIVWWRAVRT 190


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 16/75 (21%), Positives = 35/75 (46%), Gaps = 6/75 (8%)
 Frame = +2

Query: 239 YWHRNQSNSVTVQSLPNVSSIIKGY-----RDAY-LVNLEAVVFPSAPSLKIPVTVDLCW 400
           Y +R Q+    + ++P   S I+       R  Y L+++ +V   +   + +   +D+CW
Sbjct: 34  YSNRTQALESIIANIPTWLSFIRIVLVILLRAGYVLIHIGSVPVNNINLILLQNIIDICW 93

Query: 401 TTADVTVEGVNVLAT 445
            T   ++ G+ +  T
Sbjct: 94  ITMVYSLLGIIIAYT 108


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 168,308
Number of Sequences: 438
Number of extensions: 3572
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19193721
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)